RetrogeneDB ID: | retro_mmus_2212 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:154132340..154132792(+) | ||
Located in intron of: | ENSMUSG00000028360 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000090114 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2l3 | ||
Ensembl ID: | ENSMUSG00000038965 | ||
Aliases: | Ube2l3, C79827, UbcM4, Ubce7 | ||
Description: | ubiquitin-conjugating enzyme E2L 3 [Source:MGI Symbol;Acc:MGI:109240] |
Percent Identity: | 92.26 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITF |
MAASRRLMKELEEI.K.GMKNF.NIQVD.ANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITF | |
Retrocopy | MAASRRLMKELEEIGKRGMKNFHNIQVDGANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITF |
Parental | KTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLR-ADLAEEYSKDRKKFCKN |
KTKI.HPNIDEKGQVCLPVISAENWKPATK.DQ...SL.AL.NDPQPEHPLR.ADLAEEYSKDRKKFCKN | |
Retrocopy | KTKI*HPNIDEKGQVCLPVISAENWKPATKADQ---SLTALANDPQPEHPLR<ADLAEEYSKDRKKFCKN |
Parental | AEEFTKKYGEKRPVD |
AEEFTKKYGEKRPVD | |
Retrocopy | AEEFTKKYGEKRPVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 43 .50 RPM |
SRP007412_cerebellum | 0 .00 RPM | 41 .73 RPM |
SRP007412_heart | 0 .03 RPM | 24 .81 RPM |
SRP007412_kidney | 0 .06 RPM | 25 .72 RPM |
SRP007412_liver | 0 .00 RPM | 19 .47 RPM |
SRP007412_testis | 0 .05 RPM | 11 .98 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_93667 | 522 libraries | 460 libraries | 87 libraries | 3 libraries | 0 libraries |