RetrogeneDB ID: | retro_mmus_1619 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 17:15321431..15321882(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2l3 | ||
Ensembl ID: | ENSMUSG00000038965 | ||
Aliases: | Ube2l3, C79827, UbcM4, Ubce7 | ||
Description: | ubiquitin-conjugating enzyme E2L 3 [Source:MGI Symbol;Acc:MGI:109240] |
Percent Identity: | 86.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPF-KPPKIT |
M.ASRRL.KELEEIRKCGMK...NIQVDEANL.TWQGLIVPDN..YDKGAFRI.INFPA.YP..KPPKIT | |
Retrocopy | MVASRRLLKELEEIRKCGMK---NIQVDEANLSTWQGLIVPDNSSYDKGAFRIDINFPADYPL<KPPKIT |
Parental | FKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLR-ADLAEEYSKDRKKFCK |
F.TKIYH.NIDEKG.VCLPVISAE.WKPATKTDQVIQSL.ALVNDPQPEHPLR.ADLAEEYSKD.KKFCK | |
Retrocopy | FETKIYHSNIDEKGRVCLPVISAESWKPATKTDQVIQSLTALVNDPQPEHPLR<ADLAEEYSKDCKKFCK |
Parental | NAEEFTKKYGEKRPVD |
NAE.FTKKYG.KRPVD | |
Retrocopy | NAEDFTKKYGGKRPVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 43 .50 RPM |
SRP007412_cerebellum | 0 .00 RPM | 41 .73 RPM |
SRP007412_heart | 0 .03 RPM | 24 .81 RPM |
SRP007412_kidney | 0 .00 RPM | 25 .72 RPM |
SRP007412_liver | 0 .00 RPM | 19 .47 RPM |
SRP007412_testis | 0 .00 RPM | 11 .98 RPM |