RetrogeneDB ID: | retro_mmus_2272 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:87207543..87208005(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000074506 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2l3 | ||
Ensembl ID: | ENSMUSG00000038965 | ||
Aliases: | Ube2l3, C79827, UbcM4, Ubce7 | ||
Description: | ubiquitin-conjugating enzyme E2L 3 [Source:MGI Symbol;Acc:MGI:109240] |
Percent Identity: | 98.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITF |
MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITF | |
Retrocopy | MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITF |
Parental | KTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNA |
KTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQ..IALVNDPQPEHPLRADLAEEYSKDRKKFCKNA | |
Retrocopy | KTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQFFIALVNDPQPEHPLRADLAEEYSKDRKKFCKNA |
Parental | EEFTKKYGEKRPVD |
EEFTKKYGEKRPV. | |
Retrocopy | EEFTKKYGEKRPVN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 43 .50 RPM |
SRP007412_cerebellum | 0 .00 RPM | 41 .73 RPM |
SRP007412_heart | 0 .03 RPM | 24 .81 RPM |
SRP007412_kidney | 0 .02 RPM | 25 .72 RPM |
SRP007412_liver | 0 .00 RPM | 19 .47 RPM |
SRP007412_testis | 0 .05 RPM | 11 .98 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_96524 | 209 libraries | 512 libraries | 344 libraries | 7 libraries | 0 libraries |