RetrogeneDB ID: | retro_mmus_1620 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 17:15833128..15833588(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2l3 | ||
Ensembl ID: | ENSMUSG00000038965 | ||
Aliases: | Ube2l3, C79827, UbcM4, Ubce7 | ||
Description: | ubiquitin-conjugating enzyme E2L 3 [Source:MGI Symbol;Acc:MGI:109240] |
Percent Identity: | 71.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MAASRRLMKELEEIRKCGMKN-FRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKIT |
MAASRRLMKE.EE..KCGMK..F.N.QVD..N.LT.QGLIVPD.PPYD..AFR.EINFPA.YP.KPP.IT | |
Retrocopy | MAASRRLMKECEET*KCGMKS<FPNTQVDKRN*LT*QGLIVPDGPPYD--AFRTEINFPAKYPLKPPNIT |
Parental | FKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVN-DPQPEHPLRADLAEEYSKDRKKFCK |
FKTKIYHP.IDEKGQ.CL.VI.AENW..ATKT.Q.IQ.L.ALVN..PQP..PL.ADLAEE.SK.R.KFCK | |
Retrocopy | FKTKIYHPDIDEKGQICLQVITAENWNLATKTGQAIQPLAALVN<QPQPPYPLWADLAEEFSKYRRKFCK |
Parental | NAEEFT--KKYGEKRPVD |
N...FT.....GE.RPVD | |
Retrocopy | NTLGFTFXXXXGENRPVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 43 .50 RPM |
SRP007412_cerebellum | 0 .00 RPM | 41 .73 RPM |
SRP007412_heart | 0 .00 RPM | 24 .81 RPM |
SRP007412_kidney | 0 .04 RPM | 25 .72 RPM |
SRP007412_liver | 0 .00 RPM | 19 .47 RPM |
SRP007412_testis | 0 .00 RPM | 11 .98 RPM |