Parental gene: | Ube2l3, ENSRNOG00000001862 |
| Aliases: | None |
| Description: | ubiquitin-conjugating enzyme E2 L3 [Source:RefSeq peptide;Acc:NP_001102317] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 11:91100272..91139662(+) |
>ENSRNOG00000001862
ATGGCGGCCAGCAGGAGGCTGATGAAGGAGCTTGAAGAGATCCGCAAATGTGGAATGAAAAACTTCCGTAACATCCAGGT
TGATGAAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGACAACCCTCCATATGATAAGGGAGCCTTCAGAATTG
AGATCAACTTCCCAGCAGAGTATCCCTTCAAGCCACCCAAGATCACATTTAAAACAAAGATCTACCACCCTAACATCGAC
GAGAAGGGGCAGGTCTGTCTGCCCGTAATTAGTGCGGAAAACTGGAAGCCGGCCACCAAGACTGACCAAGTAATCCAGTC
CCTCATAGCACTGGTGAACGACCCTCAGCCTGAGCACCCACTCCGGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTA
AAAAATTCTGTAAGAATGCTGAAGAGTTTACAAAGAAATATGGGGAAAAGCGACCTGTGGACTAA
ATGGCGGCCAGCAGGAGGCTGATGAAGGAGCTTGAAGAGATCCGCAAATGTGGAATGAAAAACTTCCGTAACATCCAGGT
TGATGAAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGACAACCCTCCATATGATAAGGGAGCCTTCAGAATTG
AGATCAACTTCCCAGCAGAGTATCCCTTCAAGCCACCCAAGATCACATTTAAAACAAAGATCTACCACCCTAACATCGAC
GAGAAGGGGCAGGTCTGTCTGCCCGTAATTAGTGCGGAAAACTGGAAGCCGGCCACCAAGACTGACCAAGTAATCCAGTC
CCTCATAGCACTGGTGAACGACCCTCAGCCTGAGCACCCACTCCGGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTA
AAAAATTCTGTAAGAATGCTGAAGAGTTTACAAAGAAATATGGGGAAAAGCGACCTGTGGACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 42 .70 RPM |
| SRP017611_kidney | 93 .65 RPM |
| SRP017611_brain | 75 .56 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000015284 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000006044 | ortholog_one2one | 2 retrogenes | |
| Equus caballus | ENSECAG00000019274 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000008008 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000001547 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000017665 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000038965 | ortholog_one2one | 10 retrogenes | |
| Pongo abelii | ENSPPYG00000011602 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000014114 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000004544 | other_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000008794 | other_paralog | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000013741 | within_species_paralog | 9 retrogenes | |
| Tetraodon nigroviridis | ENSTNIG00000010600 | ortholog_one2many | 1 retrogene | |
| Takifugu rubripes | ENSTRUG00000003392 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_526 | 82.81 | 83.12 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_1602 | 86.45 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_rnor_2633 | 83.97 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_rnor_2799 | 75.32 | 99.35 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000001862 retrocopies