RetrogeneDB ID: | retro_mmus_541 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:27936363..27936825(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000064208 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2l3 | ||
Ensembl ID: | ENSMUSG00000038965 | ||
Aliases: | Ube2l3, C79827, UbcM4, Ubce7 | ||
Description: | ubiquitin-conjugating enzyme E2L 3 [Source:MGI Symbol;Acc:MGI:109240] |
Percent Identity: | 98.7 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITF |
MAASRRLMKELEEIRK.GMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITF | |
Retrocopy | MAASRRLMKELEEIRKRGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITF |
Parental | KTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNA |
KTKIYHPNIDEKGQVCLPVISAENWK.ATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNA | |
Retrocopy | KTKIYHPNIDEKGQVCLPVISAENWKLATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNA |
Parental | EEFTKKYGEKRPVD |
EEFTKKYGEKRPVD | |
Retrocopy | EEFTKKYGEKRPVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 43 .50 RPM |
SRP007412_cerebellum | 0 .00 RPM | 41 .73 RPM |
SRP007412_heart | 0 .03 RPM | 24 .81 RPM |
SRP007412_kidney | 0 .04 RPM | 25 .72 RPM |
SRP007412_liver | 0 .00 RPM | 19 .47 RPM |
SRP007412_testis | 0 .09 RPM | 11 .98 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_2721 | 693 libraries | 331 libraries | 47 libraries | 1 library | 0 libraries |