RetrogeneDB ID: | retro_dnov_1995 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_4128:107753..108170(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D3 | ||
Ensembl ID: | ENSDNOG00000009320 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 3 [Source:HGNC Symbol;Acc:12476] |
Percent Identity: | 86.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI |
ELSDLARDPPAQCSAGPVGDDMFHWQATIMGPND.PYQGGVFFLTIHFPTDYPFKPPKVAF.TRIYHPNI | |
Retrocopy | ELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDRPYQGGVFFLTIHFPTDYPFKPPKVAFSTRIYHPNI |
Parental | NSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPXXXXXXXXXXXXXXXYNRISREWTQKYAM |
NSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP...............YNRIS.EWTQK.AM | |
Retrocopy | NSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISWEWTQKHAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 11 .47 RPM | 44 .92 RPM |
SRP012922_cerebellum | 4 .81 RPM | 32 .86 RPM |
SRP012922_heart | 4 .18 RPM | 30 .16 RPM |
SRP012922_kidney | 7 .67 RPM | 28 .75 RPM |
SRP012922_liver | 8 .98 RPM | 33 .28 RPM |
SRP012922_lung | 8 .09 RPM | 42 .15 RPM |
SRP012922_quadricep_muscle | 12 .64 RPM | 52 .27 RPM |
SRP012922_spleen | 13 .85 RPM | 60 .89 RPM |