Parental gene: | UBE2D3, ENSDNOG00000009320 |
| Aliases: | None |
| Description: | ubiquitin-conjugating enzyme E2D 3 [Source:HGNC Symbol;Acc:12476] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_1710:4399..81214(-) |
>ENSDNOG00000009320
GAACTTAGTGATTTGGCCCGTGACCCCCCAGCACAATGTTCTGCAGGTCCAGTTGGGGATGATATGTTTCATTGGCAAGC
CACAATTATGGGACCTAATGACAGCCCATATCAAGGCGGTGTATTCTTTTTGACAATTCATTTTCCTACAGACTACCCCT
TCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTCGATATT
CTAAGATCACAGTGGTCTCCTGCTTTAACTATTTCTAAAGTTCTTTTATCCATTTGTTCACTGCTATGTGATCCGAACCC
AGATGACCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACAACAGAATATCTCGGGAATGGA
CTCAGAAGTATGCCATGTGA
GAACTTAGTGATTTGGCCCGTGACCCCCCAGCACAATGTTCTGCAGGTCCAGTTGGGGATGATATGTTTCATTGGCAAGC
CACAATTATGGGACCTAATGACAGCCCATATCAAGGCGGTGTATTCTTTTTGACAATTCATTTTCCTACAGACTACCCCT
TCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTCGATATT
CTAAGATCACAGTGGTCTCCTGCTTTAACTATTTCTAAAGTTCTTTTATCCATTTGTTCACTGCTATGTGATCCGAACCC
AGATGACCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACAACAGAATATCTCGGGAATGGA
CTCAGAAGTATGCCATGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 44 .92 RPM |
| SRP012922_cerebellum | 32 .86 RPM |
| SRP012922_heart | 30 .16 RPM |
| SRP012922_kidney | 28 .75 RPM |
| SRP012922_liver | 33 .28 RPM |
| SRP012922_lung | 42 .15 RPM |
| SRP012922_quadricep_muscle | 52 .27 RPM |
| SRP012922_spleen | 60 .89 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ciona intestinalis | ENSCING00000018711 | ortholog_one2many | 2 retrogenes | |
| Ciona savignyi | ENSCSAVG00000006136 | ortholog_one2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000005448 | other_paralog | 7 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000013821 | within_species_paralog | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000014658 | possible_ortholog | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000001291 | possible_ortholog | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000001368 | possible_ortholog | 2 retrogenes | |
| Ornithorhynchus anatinus | ENSOANG00000005415 | possible_ortholog | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000011695 | ortholog_one2one | 9 retrogenes | |
| Pongo abelii | ENSPPYG00000014967 | possible_ortholog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000015438 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000013741 | ortholog_one2one | 9 retrogenes | |
| Sus scrofa | ENSSSCG00000024306 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000029822 | possible_ortholog | 4 retrogenes | |
| Tupaia belangeri | ENSTBEG00000000270 | possible_ortholog | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_83 | 72.66 | 99.28 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_113 | 94.74 | 68.35 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_114 | 69.30 | 81.29 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_dnov_141 | 60.14 | 98.56 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_dnov_436 | 72.92 | 67.63 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_dnov_574 | 74.76 | 72.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_dnov_750 | 62.50 | 79.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_dnov_795 | 93.69 | 79.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_dnov_889 | 80.53 | 79.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_dnov_917 | 65.66 | 70.50 | Please wait, loading | Please wait, loading | Please wait, loading |
| 11. | retro_dnov_1061 | 81.82 | 79.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 12. | retro_dnov_1125 | 68.47 | 78.42 | Please wait, loading | Please wait, loading | Please wait, loading |
| 13. | retro_dnov_1167 | 66.67 | 72.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 14. | retro_dnov_1193 | 89.09 | 79.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 15. | retro_dnov_1198 | 76.32 | 52.52 | Please wait, loading | Please wait, loading | Please wait, loading |
| 16. | retro_dnov_1257 | 89.11 | 72.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 17. | retro_dnov_1544 | 80.53 | 79.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 18. | retro_dnov_1752 | 83.57 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 19. | retro_dnov_1761 | 66.67 | 58.27 | Please wait, loading | Please wait, loading | Please wait, loading |
| 20. | retro_dnov_1831 | 91.07 | 79.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 21. | retro_dnov_1862 | 88.49 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 22. | retro_dnov_1912 | 57.41 | 75.54 | Please wait, loading | Please wait, loading | Please wait, loading |
| 23. | retro_dnov_1934 | 93.69 | 79.14 | Please wait, loading | Please wait, loading | Please wait, loading |
| 24. | retro_dnov_1995 | 86.33 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 25. | retro_dnov_2084 | 78.90 | 78.42 | Please wait, loading | Please wait, loading | Please wait, loading |
| 26. | retro_dnov_2135 | 67.82 | 61.87 | Please wait, loading | Please wait, loading | Please wait, loading |
| 27. | retro_dnov_2289 | 89.90 | 71.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 28. | retro_dnov_2362 | 78.23 | 86.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 29. | retro_dnov_2457 | 86.96 | 99.28 | Please wait, loading | Please wait, loading | Please wait, loading |
| 30. | retro_dnov_2622 | 72.36 | 87.77 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000009320 retrocopies