Parental gene:

UBE2D3, ENSDNOG00000009320

Aliases:None
Description:ubiquitin-conjugating enzyme E2D 3 [Source:HGNC Symbol;Acc:12476]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_1710:4399..81214(-)


>ENSDNOG00000009320
GAACTTAGTGATTTGGCCCGTGACCCCCCAGCACAATGTTCTGCAGGTCCAGTTGGGGATGATATGTTTCATTGGCAAGC
CACAATTATGGGACCTAATGACAGCCCATATCAAGGCGGTGTATTCTTTTTGACAATTCATTTTCCTACAGACTACCCCT
TCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTCGATATT
CTAAGATCACAGTGGTCTCCTGCTTTAACTATTTCTAAAGTTCTTTTATCCATTTGTTCACTGCTATGTGATCCGAACCC
AGATGACCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACAACAGAATATCTCGGGAATGGA
CTCAGAAGTATGCCATGTGA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 44 .92 RPM
SRP012922_cerebellum 32 .86 RPM
SRP012922_heart 30 .16 RPM
SRP012922_kidney 28 .75 RPM
SRP012922_liver 33 .28 RPM
SRP012922_lung 42 .15 RPM
SRP012922_quadricep_muscle 52 .27 RPM
SRP012922_spleen 60 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000018711 ortholog_one2many 2 retrogenes
retro_cint_19, retro_cint_29,
Ciona savignyi ENSCSAVG00000006136 ortholog_one2many 1 retrogene
retro_csav_18,
Dasypus novemcinctus ENSDNOG00000005448 other_paralog 7 retrogenes
retro_dnov_1217, retro_dnov_1281, retro_dnov_1360, retro_dnov_156, retro_dnov_2026, retro_dnov_2508, retro_dnov_424,
Dasypus novemcinctus ENSDNOG00000013821 within_species_paralog 1 retrogene
retro_dnov_537,
Erinaceus europaeus ENSEEUG00000014658 possible_ortholog 3 retrogenes
retro_eeur_263, retro_eeur_566, retro_eeur_591,
Echinops telfairi ENSETEG00000001291 possible_ortholog 3 retrogenes
retro_etel_1218, retro_etel_1998, retro_etel_36,
Gorilla gorilla ENSGGOG00000001368 possible_ortholog 2 retrogenes
retro_ggor_1156, retro_ggor_2321,
Ornithorhynchus anatinus ENSOANG00000005415 possible_ortholog 1 retrogene
retro_oana_51,
Ochotona princeps ENSOPRG00000011695 ortholog_one2one 9 retrogenes
retro_opri_1042, retro_opri_1189, retro_opri_206, retro_opri_310, retro_opri_447, retro_opri_457, retro_opri_627, retro_opri_77, retro_opri_838,
Pongo abelii ENSPPYG00000014967 possible_ortholog 1 retrogene
retro_pabe_91,
Pteropus vampyrus ENSPVAG00000015438 possible_ortholog 1 retrogene
retro_pvam_234,
Rattus norvegicus ENSRNOG00000013741 ortholog_one2one 9 retrogenes
retro_rnor_2777, retro_rnor_342, retro_rnor_345, retro_rnor_539, retro_rnor_650, retro_rnor_724, retro_rnor_725, retro_rnor_772, retro_rnor_784,
Sus scrofa ENSSSCG00000024306 possible_ortholog 1 retrogene
retro_sscr_783,
Sus scrofa ENSSSCG00000029822 possible_ortholog 4 retrogenes
retro_sscr_1016, retro_sscr_672, retro_sscr_673, retro_sscr_918,
Tupaia belangeri ENSTBEG00000000270 possible_ortholog 5 retrogenes
retro_tbel_1336, retro_tbel_145, retro_tbel_1837, retro_tbel_262, retro_tbel_3134,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_83 72.66 99.28
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2. retro_dnov_113 94.74 68.35
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3. retro_dnov_114 69.30 81.29
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4. retro_dnov_141 60.14 98.56
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5. retro_dnov_436 72.92 67.63
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6. retro_dnov_574 74.76 72.66
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7. retro_dnov_750 62.50 79.14
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8. retro_dnov_795 93.69 79.14
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9. retro_dnov_889 80.53 79.14
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10. retro_dnov_917 65.66 70.50
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11. retro_dnov_1061 81.82 79.14
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12. retro_dnov_1125 68.47 78.42
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13. retro_dnov_1167 66.67 72.66
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14. retro_dnov_1193 89.09 79.14
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15. retro_dnov_1198 76.32 52.52
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16. retro_dnov_1257 89.11 72.66
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17. retro_dnov_1544 80.53 79.14
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18. retro_dnov_1752 83.57 100.00
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19. retro_dnov_1761 66.67 58.27
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20. retro_dnov_1831 91.07 79.14
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21. retro_dnov_1862 88.49 100.00
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22. retro_dnov_1912 57.41 75.54
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23. retro_dnov_1934 93.69 79.14
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24. retro_dnov_1995 86.33 100.00
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25. retro_dnov_2084 78.90 78.42
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26. retro_dnov_2135 67.82 61.87
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27. retro_dnov_2289 89.90 71.22
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28. retro_dnov_2362 78.23 86.33
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29. retro_dnov_2457 86.96 99.28
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30. retro_dnov_2622 72.36 87.77
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Download FASTA sequences of all ENSDNOG00000009320 retrocopies