RetrogeneDB ID: | retro_dnov_2315 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_6310:83716..83980(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS16 | ||
Ensembl ID: | ENSDNOG00000001527 | ||
Aliases: | None | ||
Description: | ribosomal protein S16 [Source:HGNC Symbol;Acc:10396] |
Percent Identity: | 88.64 % |
Parental protein coverage: | 57.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRV |
MPSKGPLQ.VQVFGRKKTATAVAHCKRGNGLIKV.GRPLEM.E..TLQYKLLEPVLLLGKERFAGVDIRV | |
Retrocopy | MPSKGPLQLVQVFGRKKTATAVAHCKRGNGLIKVSGRPLEMFESCTLQYKLLEPVLLLGKERFAGVDIRV |
Parental | RVKGGGHVAQIYGECQEL |
RVKGGGHVAQIY...Q.. | |
Retrocopy | RVKGGGHVAQIYAIRQSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 65 .73 RPM | 597 .41 RPM |
SRP012922_cerebellum | 39 .18 RPM | 384 .64 RPM |
SRP012922_heart | 30 .40 RPM | 340 .39 RPM |
SRP012922_kidney | 94 .19 RPM | 842 .19 RPM |
SRP012922_liver | 55 .11 RPM | 509 .00 RPM |
SRP012922_lung | 106 .30 RPM | 1072 .13 RPM |
SRP012922_quadricep_muscle | 43 .27 RPM | 405 .71 RPM |
SRP012922_spleen | 121 .90 RPM | 1176 .66 RPM |