RetrogeneDB ID:

retro_nleu_1266

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397286.1:21217991..21218320(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSNLEG00000014388
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1266
CGGCCCCTGGAGATGATTGAGCCGCGCACGCTACAGTACAAGCTGCTGGAGCCAGTTCTGCTTCTTGGCAAGGAGCGATT
TGCTGGTGTAGACATCCGTGTCCGTGTGAAGGTGGTGGTCACGTGGCCCAGATTCATGCTATCCGTCAGTCCATCTCCAA
AGCCCTGGTGGCCTATTACCAGAAATACGTGGATAAGGCTTCCAAGAAGGAGATCAAAGACATCCTCATCCAGTATGACC
GGACCCTGCTGGTAGCTGATCCTCGTCGCTGCGAGTCCAAAAAGTTTGGAGGCCCCGGTGCCCGGGCTCGCTACCAGAAA
TCCTACCGA

ORF - retro_nleu_1266 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.3 %
Parental protein coverage: 89.43 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVK-GGGHVAQIYAIRQSISKALVAYYQKYVDEASK
RPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVK.GGGHVAQI.AIRQSISKALVAYYQKYVD.ASK
RetrocopyRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVK<GGGHVAQIHAIRQSISKALVAYYQKYVDKASK
ParentalKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR
KEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR
RetrocopyKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1266 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 33 parental genes, and 149 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000141761 retrocopy
Ailuropoda melanoleuca ENSAMEG000000084708 retrocopies
Bos taurus ENSBTAG000000210933 retrocopies
Canis familiaris ENSCAFG000000055016 retrocopies
Callithrix jacchus ENSCJAG000000141706 retrocopies
Cavia porcellus ENSCPOG000000113593 retrocopies
Dasypus novemcinctus ENSDNOG000000015273 retrocopies
Equus caballus ENSECAG000000043112 retrocopies
Echinops telfairi ENSETEG000000152904 retrocopies
Felis catus ENSFCAG000000107434 retrocopies
Homo sapiens ENSG0000010519311 retrocopies
Gorilla gorilla ENSGGOG0000001441410 retrocopies
Loxodonta africana ENSLAFG000000015411 retrocopy
Macropus eugenii ENSMEUG000000103802 retrocopies
Microcebus murinus ENSMICG000000061104 retrocopies
Myotis lucifugus ENSMLUG000000290895 retrocopies
Macaca mulatta ENSMMUG000000193708 retrocopies
Monodelphis domestica ENSMODG000000135454 retrocopies
Mustela putorius furoENSMPUG000000177225 retrocopies
Mus musculus ENSMUSG0000003756311 retrocopies
Nomascus leucogenys ENSNLEG00000014388 3 retrocopies
retro_nleu_1266 , retro_nleu_248, retro_nleu_46,
Oryctolagus cuniculus ENSOCUG0000000215014 retrocopies
Otolemur garnettii ENSOGAG000000044974 retrocopies
Oreochromis niloticus ENSONIG000000000061 retrocopy
Pelodiscus sinensis ENSPSIG000000169301 retrocopy
Pan troglodytes ENSPTRG0000001097011 retrocopies
Rattus norvegicus ENSRNOG000000195783 retrocopies
Sorex araneus ENSSARG000000008521 retrocopy
Sus scrofa ENSSSCG000000107121 retrocopy
Sus scrofa ENSSSCG000000208173 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000067941 retrocopy
Tarsius syrichta ENSTSYG000000052414 retrocopies
Tursiops truncatus ENSTTRG000000035711 retrocopy



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