Parental gene:

RPS16, ENSCJAG00000014170

Aliases:None
Description:ribosomal protein S16 [Source:HGNC Symbol;Acc:10396]
Organism:Marmoset (Callithrix jacchus)
Coordinates:22:32736899..32738744(-)


>ENSCJAG00000014170
ATGCCGTCCAAGGGTCCGCTGCAGTCCGTGCAGGTCTTCGGACGCAAGAAGACAGCTACAGCTGTGGCGCACTGCAAACG
CGGCAATGGCCTCATCAAGGTGAACGGGCGGCCCCTGGAGATGATCGAGCCGCGTACTCTCCAATACAAGCTGCTGGAGC
CAGTTCTGCTTCTCGGCAAGGAGCGATTTGCTGGTGTGGATATCCGGGTCCGTGTGAAGGGTGGCGGTCACGTGGCCCAG
ATTTATGCTATCCGTCAGTCCATCTCCAAAGCCCTGGTGGCCTATTACCAGAAATATGTGGATGAGGCTTCCAAGAAGGA
GATCAAAGACATCCTCATCCAGTATGACCGGACCCTGCTGGTAGCTGATCCCCGGCGCTGTGAATCCAAAAAGTTTGGAG
GCCCTGGTGCCCGTGCTCGATACCAGAAATCCTACCGATAA

Library Parental gene expression (RPM)
SRP051959_spleen 149 .94 RPM
SRP051959_skeletal_muscle 109 .23 RPM
SRP051959_lymph_node 183 .03 RPM
SRP051959_lung 109 .63 RPM
SRP051959_liver 106 .61 RPM
SRP051959_kidney 87 .48 RPM
SRP051959_heart 87 .65 RPM
SRP051959_colon 105 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014176 ortholog_one2many 1 retrogene
retro_acar_194,
Ailuropoda melanoleuca ENSAMEG00000008470 ortholog_one2one 8 retrogenes
retro_amel_1105, retro_amel_1143, retro_amel_1463, retro_amel_1790, retro_amel_1865, retro_amel_306, retro_amel_668, retro_amel_840,
Bos taurus ENSBTAG00000021093 ortholog_one2many 3 retrogenes
retro_btau_1509, retro_btau_167, retro_btau_441,
Canis familiaris ENSCAFG00000005501 possible_ortholog 6 retrogenes
retro_cfam_1349, retro_cfam_1754, retro_cfam_2142, retro_cfam_2147, retro_cfam_799, retro_cfam_908,
Cavia porcellus ENSCPOG00000011359 ortholog_one2one 3 retrogenes
retro_cpor_1266, retro_cpor_1408, retro_cpor_1515,
Dasypus novemcinctus ENSDNOG00000001527 possible_ortholog 3 retrogenes
retro_dnov_2260, retro_dnov_2315, retro_dnov_308,
Equus caballus ENSECAG00000004311 possible_ortholog 2 retrogenes
retro_ecab_186, retro_ecab_779,
Echinops telfairi ENSETEG00000015290 possible_ortholog 4 retrogenes
retro_etel_1825, retro_etel_1834, retro_etel_193, retro_etel_351,
Felis catus ENSFCAG00000010743 possible_ortholog 4 retrogenes
retro_fcat_1258, retro_fcat_1709, retro_fcat_1806, retro_fcat_1976,
Homo sapiens ENSG00000105193 ortholog_one2one 11 retrogenes
retro_hsap_118, retro_hsap_1658, retro_hsap_1736, retro_hsap_1977, retro_hsap_2064, retro_hsap_2230, retro_hsap_2327, retro_hsap_3593, retro_hsap_4209, retro_hsap_787, retro_hsap_813,
Gorilla gorilla ENSGGOG00000014414 possible_ortholog 10 retrogenes
retro_ggor_110, retro_ggor_1250, retro_ggor_1344, retro_ggor_1664, retro_ggor_1766, retro_ggor_193, retro_ggor_2423, retro_ggor_2819, retro_ggor_652, retro_ggor_667,
Loxodonta africana ENSLAFG00000001541 ortholog_one2many 1 retrogene
retro_lafr_1191,
Macropus eugenii ENSMEUG00000010380 possible_ortholog 2 retrogenes
retro_meug_1306, retro_meug_612,
Microcebus murinus ENSMICG00000006110 possible_ortholog 4 retrogenes
retro_mmur_1006, retro_mmur_1058, retro_mmur_375, retro_mmur_798,
Myotis lucifugus ENSMLUG00000029089 ortholog_one2one 5 retrogenes
retro_mluc_1906, retro_mluc_2096, retro_mluc_2174, retro_mluc_2529, retro_mluc_481,
Macaca mulatta ENSMMUG00000019370 ortholog_one2many 8 retrogenes
retro_mmul_1018, retro_mmul_1080, retro_mmul_1175, retro_mmul_1219, retro_mmul_1403, retro_mmul_20, retro_mmul_767, retro_mmul_862,
Monodelphis domestica ENSMODG00000013545 ortholog_one2many 4 retrogenes
retro_mdom_1668, retro_mdom_1823, retro_mdom_815, retro_mdom_856,
Mustela putorius furo ENSMPUG00000017722 ortholog_one2one 5 retrogenes
retro_mputfur_283, retro_mputfur_322, retro_mputfur_447, retro_mputfur_701, retro_mputfur_985,
Mus musculus ENSMUSG00000037563 ortholog_one2one 11 retrogenes
retro_mmus_1780, retro_mmus_2058, retro_mmus_2125, retro_mmus_2697, retro_mmus_2727, retro_mmus_3091, retro_mmus_3173, retro_mmus_3198, retro_mmus_3202, retro_mmus_700, retro_mmus_771,
Nomascus leucogenys ENSNLEG00000014388 possible_ortholog 3 retrogenes
retro_nleu_1266, retro_nleu_248, retro_nleu_46,
Oryctolagus cuniculus ENSOCUG00000002150 possible_ortholog 14 retrogenes
retro_ocun_1028, retro_ocun_1073, retro_ocun_1394, retro_ocun_1430, retro_ocun_1436, retro_ocun_1774, retro_ocun_371, retro_ocun_580, retro_ocun_632, retro_ocun_645, retro_ocun_670, retro_ocun_837, retro_ocun_906, retro_ocun_986,
Otolemur garnettii ENSOGAG00000004497 possible_ortholog 4 retrogenes
retro_ogar_1229, retro_ogar_1309, retro_ogar_1313, retro_ogar_98,
Oreochromis niloticus ENSONIG00000000006 ortholog_one2many 1 retrogene
retro_onil_52,
Pelodiscus sinensis ENSPSIG00000016930 ortholog_one2many 1 retrogene
retro_psin_55,
Pan troglodytes ENSPTRG00000010970 possible_ortholog 11 retrogenes
retro_ptro_1223, retro_ptro_1318, retro_ptro_1376, retro_ptro_1577, retro_ptro_1699, retro_ptro_2432, retro_ptro_2857, retro_ptro_2953, retro_ptro_2957, retro_ptro_548, retro_ptro_565,
Rattus norvegicus ENSRNOG00000019578 ortholog_one2one 3 retrogenes
retro_rnor_10, retro_rnor_1823, retro_rnor_302,
Sorex araneus ENSSARG00000000852 possible_ortholog 1 retrogene
retro_sara_595,
Sus scrofa ENSSSCG00000010712 possible_ortholog 1 retrogene
retro_sscr_731,
Sus scrofa ENSSSCG00000020817 ortholog_one2one 3 retrogenes
retro_sscr_478, retro_sscr_5, retro_sscr_723,
Ictidomys tridecemlineatus ENSSTOG00000006794 possible_ortholog 1 retrogene
retro_itri_321,
Tarsius syrichta ENSTSYG00000005241 possible_ortholog 4 retrogenes
retro_tsyr_1115, retro_tsyr_1208, retro_tsyr_1492, retro_tsyr_1780,
Tursiops truncatus ENSTTRG00000003571 possible_ortholog 1 retrogene
retro_ttru_202,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_885 65.48 56.85
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2. retro_cjac_905 73.33 51.37
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3. retro_cjac_949 76.19 100.00
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4. retro_cjac_2641 74.15 99.32
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5. retro_cjac_2737 62.89 65.07
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6. retro_cjac_3019 98.72 53.42
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Download FASTA sequences of all ENSCJAG00000014170 retrocopies