RetrogeneDB ID: | retro_cpor_1408 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_8:51822702..51823087(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000022096 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS16 | ||
Ensembl ID: | ENSCPOG00000011359 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.6 % |
Parental protein coverage: | 85.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSI |
.TA.AHCKRGN.LIKVNGRPLE.I.P..LQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIY.IRQSI | |
Retrocopy | STAMAHCKRGNSLIKVNGRPLEVIKPHMLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYPIRQSI |
Parental | SKALVAYYQKYVDEAS-KKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR |
SKAL.AYYQKYVDEAS.KKEIKD.LIQYDRTLLVA.P..CESKKFGGPGA.AR.QKSYR | |
Retrocopy | SKALMAYYQKYVDEAS>KKEIKDVLIQYDRTLLVAEPCCCESKKFGGPGAHAR*QKSYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 98 .64 RPM |
SRP017611_kidney | 0 .00 RPM | 208 .33 RPM |
SRP017611_liver | 0 .04 RPM | 117 .17 RPM |
SRP040447_lung | 0 .05 RPM | 278 .59 RPM |
SRP040447_skeletal_muscle | 0 .05 RPM | 371 .03 RPM |