RetrogeneDB ID: | retro_cpor_1266 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_61:7652667..7652992(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS16 | ||
Ensembl ID: | ENSCPOG00000011359 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.23 % |
Parental protein coverage: | 75.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | LVTMPSKGPLQSVQV-FGRKKTATAVAHCKRGNGLIKVNGRPL-EMIEPRTLQYKLLEPVLLLGKERFAG |
LVTMPSKGPL.S.QV...R..TA.A...CKRG.GLIK.N..PL.EMIEP.TLQ.KLLEPVLLLG...FAG | |
Retrocopy | LVTMPSKGPLPSMQV<HKRMATAVA--YCKRGSGLIKANRHPL<EMIEPHTLQDKLLEPVLLLGRGPFAG |
Parental | VDIRV-RVKGGGHVAQIYAIR-QSISKALVA-YYQKYVDEASKKEIK |
.DI.V.RV.GGG.VAQIYA....SISKAL.A.YYQK.V..ASKKEI. | |
Retrocopy | ADIPV<RV*GGGPVAQIYALH<LSISKALGA<YYQKCVHDASKKEIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 98 .64 RPM |
SRP017611_kidney | 0 .00 RPM | 208 .33 RPM |
SRP017611_liver | 0 .00 RPM | 117 .17 RPM |
SRP040447_lung | 0 .00 RPM | 278 .59 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 371 .03 RPM |