RetrogeneDB ID: | retro_dnov_905 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_119701:6892..7238(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL2 | ||
Ensembl ID: | ENSDNOG00000017048 | ||
Aliases: | None | ||
Description: | cofilin 2 (muscle) [Source:HGNC Symbol;Acc:1875] |
Percent Identity: | 63.87 % |
Parental protein coverage: | 74.84 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | LFCLSDDKRQIIVEEAKQILV-GDIGDTVEDP-YTSFVKLLPLNDCRYALYDATYETKESKKEDLVFIFW |
LFCLS.DK.QIIVEE.KQILV.GD.GDTVE.P..TSFVKLLPLNDC.YAL.......K.S.......... | |
Retrocopy | LFCLSNDKSQIIVEESKQILV<GDTGDTVEEP<HTSFVKLLPLNDCQYAL*NSNTKQK-SLRKKT*YLYS |
Parental | APESAPLKSKMIYASSKDAIKKKFTG-KHEWQVNGLNDIKDRSTLGEKL |
......L.S.M.YASSKDAIKKKFTG.KH.WQVNGL.D.KD.STLGE.. | |
Retrocopy | GILRIHL*STMTYASSKDAIKKKFTGIKHVWQVNGLDDTKDNSTLGEEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 2 .14 RPM |
SRP012922_cerebellum | 0 .00 RPM | 5 .36 RPM |
SRP012922_heart | 0 .00 RPM | 12 .99 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .27 RPM |
SRP012922_liver | 0 .00 RPM | 0 .00 RPM |
SRP012922_lung | 0 .00 RPM | 0 .31 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 63 .52 RPM |
SRP012922_spleen | 0 .00 RPM | 2 .17 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000000934 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017048 | 7 retrocopies |
retro_dnov_1072, retro_dnov_1379, retro_dnov_1697, retro_dnov_2195, retro_dnov_2691, retro_dnov_715, retro_dnov_905 ,
|
Erinaceus europaeus | ENSEEUG00000013155 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000006010 | 3 retrocopies | |
Latimeria chalumnae | ENSLACG00000018011 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000739 | 11 retrocopies | |
Monodelphis domestica | ENSMODG00000012949 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009383 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000004732 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000391 | 2 retrocopies |