RetrogeneDB ID: | retro_ocun_1397 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 8:6974850..6975340(+) | ||
Located in intron of: | ENSOCUG00000017747 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL2 | ||
Ensembl ID: | ENSOCUG00000009383 | ||
Aliases: | None | ||
Description: | cofilin 2 (muscle) [Source:HGNC Symbol;Acc:1875] |
Percent Identity: | 84.34 % |
Parental protein coverage: | 98.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | ASGVTVNDEVIKVFNDMKVRKSSTQEEIKK-RKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTS |
ASGVTVNDEVIKVFNDMKV.K.STQEEIKK.RKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTS | |
Retrocopy | ASGVTVNDEVIKVFNDMKVKKCSTQEEIKK<RKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTS |
Parental | FVKLLPLNDC-RYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNG |
.VKLLPLND..RYALYDATYET.ESKKEDLVFI.W.PESAPLKS.MIYASSKDAIKKKFTGIKHEWQV.G | |
Retrocopy | SVKLLPLNDS<RYALYDATYETEESKKEDLVFISWGPESAPLKSSMIYASSKDAIKKKFTGIKHEWQVSG |
Parental | LDDIKDLCFLEKSLKWNIVLRSESPP |
LDDIKD...L...L....V...E..P | |
Retrocopy | LDDIKDRSTLGEKLGGSAVVSLEGKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .49 RPM | 38 .36 RPM |
SRP017611_kidney | 0 .41 RPM | 11 .35 RPM |
SRP017611_liver | 0 .31 RPM | 7 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000017048 | 7 retrocopies | |
Erinaceus europaeus | ENSEEUG00000013155 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000006010 | 3 retrocopies | |
Latimeria chalumnae | ENSLACG00000018011 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000739 | 11 retrocopies | |
Monodelphis domestica | ENSMODG00000012949 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009383 | 1 retrocopy |
retro_ocun_1397 ,
|
Oryctolagus cuniculus | ENSOCUG00000025604 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000027456 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000004732 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000391 | 2 retrocopies |