RetrogeneDB ID: | retro_eeur_513 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_332718:3539..3863(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL2 | ||
Ensembl ID: | ENSEEUG00000013155 | ||
Aliases: | None | ||
Description: | cofilin 2 (muscle) [Source:HGNC Symbol;Acc:1875] |
Percent Identity: | 73.15 % |
Parental protein coverage: | 65.45 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | DIGDTVEDPYTAFVKLLPLNDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKF |
D.G.TV.DPY..FVK.LP..DC.YAL.DATYETKESKK.DLVFIFWAP..APLKSKM..ASSKDAIKKK. | |
Retrocopy | DVGQTVDDPYATFVKMLPDKDCHYAL*DATYETKESKKKDLVFIFWAPKCAPLKSKMTRASSKDAIKKKL |
Parental | TGIKHEWQVNGLDDIKDRSTLGEKLGGNVVVSLEGKPL |
TGIKHE.Q.N.....KD..TL.EKLGG..V.SLEGKPL | |
Retrocopy | TGIKHELQANCYE*VKDCCTLAEKLGGSAVISLEGKPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 72 .84 RPM | 26 .59 RPM |
SRP017611_kidney | 50 .07 RPM | 8 .25 RPM |
SRP017611_liver | 21 .87 RPM | 0 .80 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000017048 | 7 retrocopies | |
Erinaceus europaeus | ENSEEUG00000011893 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013155 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000006010 | 3 retrocopies | |
Latimeria chalumnae | ENSLACG00000018011 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000739 | 11 retrocopies | |
Monodelphis domestica | ENSMODG00000012949 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009383 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000004732 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000391 | 2 retrocopies |