RetrogeneDB ID: | retro_dnov_2691 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_99281:5950..6416(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL2 | ||
Ensembl ID: | ENSDNOG00000017048 | ||
Aliases: | None | ||
Description: | cofilin 2 (muscle) [Source:HGNC Symbol;Acc:1875] |
Percent Identity: | 81.01 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVE-DPYT |
MASGV..NDE...VFN.MKVRK.STQEEI..RKK.VLFCLSD.KRQIIVEEAKQIL.G.IG.TVE..P.T | |
Retrocopy | MASGVAGNDEALRVFNGMKVRKCSTQEEI*RRKKTVLFCLSDNKRQIIVEEAKQILAGGIGGTVE<EPHT |
Parental | SFVKLLPLNDCRYALYDATYE-TKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTG-KHEWQVN |
SFVKLL.LND.RY.LYDAT.E..K.SKKEDLVFIFWAPESAPLKSK.IYASSKDAIKKKFTG.KHEW..N | |
Retrocopy | SFVKLLLLNDYRYGLYDATHE<KK*SKKEDLVFIFWAPESAPLKSKTIYASSKDAIKKKFTGIKHEWRGN |
Parental | GLNDIKDRSTLGEKLGGN |
GL.DIKD.STLGEKLGGN | |
Retrocopy | GLDDIKDHSTLGEKLGGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 2 .14 RPM |
SRP012922_cerebellum | 0 .00 RPM | 5 .36 RPM |
SRP012922_heart | 0 .00 RPM | 12 .99 RPM |
SRP012922_kidney | 0 .00 RPM | 0 .27 RPM |
SRP012922_liver | 0 .00 RPM | 0 .00 RPM |
SRP012922_lung | 0 .00 RPM | 0 .31 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 63 .52 RPM |
SRP012922_spleen | 0 .00 RPM | 2 .17 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000000934 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000017048 | 7 retrocopies |
retro_dnov_1072, retro_dnov_1379, retro_dnov_1697, retro_dnov_2195, retro_dnov_2691 , retro_dnov_715, retro_dnov_905,
|
Erinaceus europaeus | ENSEEUG00000013155 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000006010 | 3 retrocopies | |
Latimeria chalumnae | ENSLACG00000018011 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000739 | 11 retrocopies | |
Monodelphis domestica | ENSMODG00000012949 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009383 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000004732 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000391 | 2 retrocopies |