RetrogeneDB ID: | retro_ecab_82 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 19:37029252..37030245(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000005033 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WDR5 | ||
Ensembl ID: | ENSECAG00000017389 | ||
Aliases: | None | ||
Description: | WD repeat domain 5 [Source:HGNC Symbol;Acc:12757] |
Percent Identity: | 83.69 % |
Parental protein coverage: | 97.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK |
E...A.A......SA..S.....KPNYALK.TL.GHT.AVSSVKFSP.GEWLASSSADK.I.IWGAYDGK | |
Retrocopy | ESGDAGAESALCPSANPSQQASEKPNYALKCTLVGHTEAVSSVKFSPSGEWLASSSADKVIIIWGAYDGK |
Parental | FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS |
.EKT..GH.L.ISDVAWSSDS..LVSASDDKTLKIWDV.SGKCLKTLKGHSNYVFCCNFNP.SNLI.SGS | |
Retrocopy | YEKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKIWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGS |
Parental | FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS |
FDESV.IW.VKTGKCLKTL.AHSDPVSAVHFN..GSLIVS.SYDG.CRIWD.ASGQCLK.L.DDDNPPVS | |
Retrocopy | FDESVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGVCRIWDAASGQCLKMLVDDDNPPVS |
Parental | FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL |
FVKFSPNGKY.L.ATLDNTLKLWDYS.G.CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL | |
Retrocopy | FVKFSPNGKYLLIATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL |
Parental | QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD |
QTKEIVQ.LQGHTDVVIS.ACHPTENIIASAAL.ND.TIKLW.S. | |
Retrocopy | QTKEIVQTLQGHTDVVISAACHPTENIIASAALGNDRTIKLWTSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 2 .66 RPM | 6 .49 RPM |
SRP021940_cerebellum | 1 .87 RPM | 16 .15 RPM |
SRP021940_embryo | 3 .45 RPM | 34 .22 RPM |
SRP021940_placental_villous | 2 .21 RPM | 17 .32 RPM |
SRP021940_synovial_membrane | 2 .20 RPM | 20 .97 RPM |
SRP021940_testis | 2 .05 RPM | 75 .90 RPM |