Parental gene:

WDR5, ENSSSCG00000024912

Aliases:None
Description:WD repeat domain 5 [Source:HGNC Symbol;Acc:12757]
Organism:Pig (Sus scrofa)
Coordinates:1:307533211..307551074(+)


>ENSSSCG00000024912
ATGGCAACCGAGGAGAAGAAGCCGGAGACCGAGGCCGCCAGAGCGCAGCCCGCCCCGTCGGCGGCAGCCACGCAGAGCAA
GCCCACACCTGTTAAACCCAACTACGCGCTGAAGTTCACCCTGGCCGGCCACACGAAAGCTGTGTCCTCGGTGAAGTTCA
GCCCGAACGGGGAGTGGCTGGCGAGTTCGTCTGCAGATAAACTCATTAAGATTTGGGGAGCTTACGACGGAAAATTTGAG
AAAACCATATCTGGTCACAAGCTGGGAATATCAGACGTGGCCTGGTCGTCAGACTCTAACCTTCTCGTTTCTGCCTCAGA
TGACAAGACCCTAAAGATATGGGACGTGAGCTCGGGGAAGTGTCTGAAGACCCTCAAGGGACACAGTAATTACGTCTTCT
GCTGTAACTTCAACCCCCAGTCCAACCTCATCGTCTCGGGCTCCTTCGACGAGAGCGTGAGGATTTGGGACGTGAAGACA
GGGAAGTGCCTCAAGACGCTGCCCGCGCACTCGGATCCCGTCTCAGCCGTTCACTTTAACCGGGACGGCTCCCTGATCGT
GTCGAGCAGCTACGACGGCCTCTGCCGGATCTGGGACACCGCCTCGGGCCAGTGCCTGAAGACGCTGATCGATGACGACA
ACCCGCCCGTGTCCTTCGTGAAGTTCTCTCCGAACGGCAAGTACATCCTGGCCGCGACCTTGGACAACACGCTGAAGCTC
TGGGACTACAGCAAAGGGAAGTGTCTGAAGACGTACACCGGCCACAAGAATGAGAAGTACTGCATATTCGCGAATTTCTC
TGTCACTGGCGGGAAGTGGATCGTGTCGGGCTCGGAGGACAACTTGGTTTACATCTGGAACCTGCAGACGAAAGAGATTG
TGCAGAAGCTGCAGGGCCACACGGACGTGGTCATCTCGACGGCCTGCCACCCCACAGAGAACATCATCGCCTCGGCCGCG
CTGGAGAACGACAAGACCATCAAGCTCTGGAAGAGCGACTGCTAG

Library Parental gene expression (RPM)
SRP014902_placenta 45 .53 RPM
SRP014902_testis 56 .44 RPM
SRP018856_adipose 27 .20 RPM
SRP018288_kidney 31 .32 RPM
SRP018288_lung 30 .75 RPM
SRP018288_liver 25 .91 RPM
SRP018288_heart 14 .46 RPM
SRP035408_liver 36 .81 RPM
SRP035408_brain 41 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011179 ortholog_one2one 1 retrogene
retro_amel_29,
Bos taurus ENSBTAG00000047031 ortholog_one2one 1 retrogene
retro_btau_299,
Canis familiaris ENSCAFG00000019830 ortholog_one2one 1 retrogene
retro_cfam_128,
Callithrix jacchus ENSCJAG00000010123 ortholog_one2one 1 retrogene
retro_cjac_1,
Cavia porcellus ENSCPOG00000014790 ortholog_one2one 1 retrogene
retro_cpor_12,
Dipodomys ordii ENSDORG00000015010 ortholog_one2one 1 retrogene
retro_dord_7,
Equus caballus ENSECAG00000017389 ortholog_one2one 1 retrogene
retro_ecab_82,
Echinops telfairi ENSETEG00000015731 ortholog_one2one 1 retrogene
retro_etel_15,
Felis catus ENSFCAG00000005712 ortholog_one2one 1 retrogene
retro_fcat_119,
Homo sapiens ENSG00000196363 ortholog_one2one 1 retrogene
retro_hsap_11,
Gorilla gorilla ENSGGOG00000004997 ortholog_one2one 2 retrogenes
retro_ggor_171, retro_ggor_2023,
Loxodonta africana ENSLAFG00000011192 ortholog_one2one 1 retrogene
retro_lafr_55,
Microcebus murinus ENSMICG00000008085 ortholog_one2one 1 retrogene
retro_mmur_34,
Myotis lucifugus ENSMLUG00000002236 ortholog_one2one 1 retrogene
retro_mluc_11,
Macaca mulatta ENSMMUG00000014159 ortholog_one2many 1 retrogene
retro_mmul_190,
Mustela putorius furo ENSMPUG00000012184 ortholog_one2one 1 retrogene
retro_mputfur_2,
Mus musculus ENSMUSG00000026917 ortholog_one2one 1 retrogene
retro_mmus_132,
Nomascus leucogenys ENSNLEG00000013472 ortholog_one2one 1 retrogene
retro_nleu_63,
Otolemur garnettii ENSOGAG00000008960 ortholog_one2one 1 retrogene
retro_ogar_86,
Procavia capensis ENSPCAG00000013476 ortholog_one2one 1 retrogene
retro_pcap_43,
Pan troglodytes ENSPTRG00000023653 ortholog_one2one 2 retrogenes
retro_ptro_18, retro_ptro_1975,
Pteropus vampyrus ENSPVAG00000001666 ortholog_one2one 1 retrogene
retro_pvam_112,
Rattus norvegicus ENSRNOG00000008212 ortholog_one2one 1 retrogene
retro_rnor_258,
Ictidomys tridecemlineatus ENSSTOG00000015899 ortholog_one2one 1 retrogene
retro_itri_117,
Drosophila melanogaster FBgn0040066 ortholog_one2many 1 retrogene
retro_dmel_69,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_1 82.88 99.70
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Download FASTA sequences of all ENSSSCG00000024912 retrocopies