RetrogeneDB ID: retro_ogar_86

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873608.1:3520734..3521727(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000033502
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: WDR5
• Ensembl ID: ENSOGAG00000008960
• Aliases: None
• Description: WD repeat domain 5 [Source:HGNC Symbol;Acc:12757]

Sequence

>retro_ogar_86
ATGGCAACAAAGGAGTCAGCAGATGCCAAAGCACAGTTGGCCCTCACCTCTTCAGCGAATTGGAGCCAAGAAGTGCCTGA
AAAACCGAACTATACTCTCAAATGTACTCTCATGGGACATACAGAAGCAATATCATCAGTTAAGTTTAGTCCTAATGGAG
AATGGCTAGCAAGTTCTTCTGCTGATAAACTAATTATACTTTGGGGAGCATATGATGGAAAACATGAGAAAACACTCGTT
GGTCATACTCTAGAAATATCAGATGTTGCCTGGTCATCAGATTCCAGTCATCTTGTTTCTGCTTCAGATGATAAAACTTT
AAAGATATGGGATGTGAGATCAGGAAAATGTTTGAAAACACTGACGGGACACAGTAATTATGTGTTTTGCTGTAATTTCA
ACCCACCATCCAACCTTATCATTTCAGGATCTTTTGATGAGAGTGTGAAAATATGGGAAGTGAAAACAGGAAAGTGCCTC
AAGACCTTGTCTGCGCATTCTGACCCAGTTTCTGCTGTTCATTTTAATTGTAATGGGTCTTTGATAGTGTCAGGTAGCTA
TGATGGTCTCTGTAGAATCTGGGATGCTGCATCAGGCCAGTGTTTGAAAACGCTTGCTGATGATGATAACCCTCCTGTCT
CTTTTGTAAAATTTTCTCCAAATGGTAAATACATTCTTACTGCAACTTTGGACAACACTCTCAAACTGTGGGATTATAGC
AGAGGCAGATGTCTGAAAACATACACTGGTCACAAGAATGAGAAATACTGCATTTTTGCCAATTTTTCTGTTACTGGTGG
AAAGTGGATTGTATCTGGTTCTGAGGATAATCTGGTTTACATTTGGAACCTTCAGACCAAAGAGATTGTACAGAAATTAC
AAGGTCATACAGATGTTGTGATCTCAGCAGCTTGCCATCCTACAGAAAACATCATTGCATCAGCAGCATTAGAAAATGAC
AAAACAATTAAGCTGTGGATGAGTAAGCACTAA

Alignment

ORF - retro_ogar_86 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.11 %
• Parental protein coverage: 97.01 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ETEAVRAQPAPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK
          E.....AQ.A..SSA..S...P.KPNY.LK.TL.GHT.A.SSVKFSPNGEWLASSSADKLI..WGAYDGK
Retrocopy ESADAKAQLALTSSANWSQEVPEKPNYTLKCTLMGHTEAISSVKFSPNGEWLASSSADKLIILWGAYDGK

Parental  FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS
          .EKT..GH.L.ISDVAWSSDS..LVSASDDKTLKIWDV.SGKCLKTL.GHSNYVFCCNFNP.SNLI.SGS
Retrocopy HEKTLVGHTLEISDVAWSSDSSHLVSASDDKTLKIWDVRSGKCLKTLTGHSNYVFCCNFNPPSNLIISGS

Parental  FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS
          FDESV.IW.VKTGKCLKTL.AHSDPVSAVHFN..GSLIVS.SYDGLCRIWD.ASGQCLKTL.DDDNPPVS
Retrocopy FDESVKIWEVKTGKCLKTLSAHSDPVSAVHFNCNGSLIVSGSYDGLCRIWDAASGQCLKTLADDDNPPVS

Parental  FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL
          FVKFSPNGKYIL.ATLDNTLKLWDYS.G.CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL
Retrocopy FVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL

Parental  QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS
          QTKEIVQKLQGHTDVVIS.ACHPTENIIASAALENDKTIKLW.S
Retrocopy QTKEIVQKLQGHTDVVISAACHPTENIIASAALENDKTIKLWMS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_86 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 27 parental genes, and 29 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000011179	1 retrocopy	retro_amel_29,
Bos taurus	ENSBTAG00000047031	1 retrocopy	retro_btau_299,
Canis familiaris	ENSCAFG00000019830	1 retrocopy	retro_cfam_128,
Callithrix jacchus	ENSCJAG00000010123	1 retrocopy	retro_cjac_1,
Cavia porcellus	ENSCPOG00000014790	1 retrocopy	retro_cpor_12,
Dipodomys ordii	ENSDORG00000015010	1 retrocopy	retro_dord_7,
Equus caballus	ENSECAG00000017389	1 retrocopy	retro_ecab_82,
Echinops telfairi	ENSETEG00000015731	1 retrocopy	retro_etel_15,
Felis catus	ENSFCAG00000005712	1 retrocopy	retro_fcat_119,
Homo sapiens	ENSG00000196363	1 retrocopy	retro_hsap_11,
Gorilla gorilla	ENSGGOG00000004997	2 retrocopies	retro_ggor_171, retro_ggor_2023,
Loxodonta africana	ENSLAFG00000011192	1 retrocopy	retro_lafr_55,
Microcebus murinus	ENSMICG00000008085	1 retrocopy	retro_mmur_34,
Myotis lucifugus	ENSMLUG00000002236	1 retrocopy	retro_mluc_11,
Macaca mulatta	ENSMMUG00000014159	1 retrocopy	retro_mmul_190,
Mustela putorius furo	ENSMPUG00000012184	1 retrocopy	retro_mputfur_2,
Mus musculus	ENSMUSG00000026917	1 retrocopy	retro_mmus_132,
Nomascus leucogenys	ENSNLEG00000013472	1 retrocopy	retro_nleu_63,
Otolemur garnettii	ENSOGAG00000007802	1 retrocopy	retro_ogar_2854,
Otolemur garnettii	ENSOGAG00000008960	1 retrocopy	retro_ogar_86 ,
Procavia capensis	ENSPCAG00000013476	1 retrocopy	retro_pcap_43,
Pan troglodytes	ENSPTRG00000023653	2 retrocopies	retro_ptro_18, retro_ptro_1975,
Pteropus vampyrus	ENSPVAG00000001666	1 retrocopy	retro_pvam_112,
Rattus norvegicus	ENSRNOG00000008212	1 retrocopy	retro_rnor_258,
Sus scrofa	ENSSSCG00000024912	1 retrocopy	retro_sscr_1,
Ictidomys tridecemlineatus	ENSSTOG00000015899	1 retrocopy	retro_itri_117,
Drosophila melanogaster	FBgn0040066	1 retrocopy	retro_dmel_69,