RetrogeneDB ID: | retro_hsap_11 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 3:122133382..122134375(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000196981 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WDR5 | ||
Ensembl ID: | ENSG00000196363 | ||
Aliases: | WDR5, BIG-3, SWD3 | ||
Description: | WD repeat domain 5 [Source:HGNC Symbol;Acc:12757] |
Percent Identity: | 86.46 % |
Parental protein coverage: | 97.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK |
E...A.AQ...SSSA.QSK..P..PNYALK.TL.GHT.AVSSVKFSPNGEWLASSSAD.LI.IWGAYDGK | |
Retrocopy | ESRDAKAQLALSSSANQSKEVPENPNYALKCTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGK |
Parental | FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS |
.EKT..GH.L.ISDVAWSSDS..LVSASDDKTLK.WDV.SGKCLKTLKGHSNYVFCCNFNP.SNLI.SGS | |
Retrocopy | YEKTLYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGS |
Parental | FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS |
FDE.V.IW.VKTGKCLKTL.AHSDPVSAVHFN..GSLIVS.SYDGLCRIWD.ASGQCLKTL.DDDNPPVS | |
Retrocopy | FDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVS |
Parental | FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL |
FVKFSPNGKYIL.ATLDNTLKLWDYS.G.CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL | |
Retrocopy | FVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL |
Parental | QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD |
QTKEIVQKLQGHTDVVIS.ACHPTEN.IASAALENDKTIKLW.S. | |
Retrocopy | QTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKTIKLWMSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 2 .05 RPM | 18 .61 RPM |
bodymap2_adrenal | 3 .50 RPM | 23 .56 RPM |
bodymap2_brain | 1 .20 RPM | 16 .71 RPM |
bodymap2_breast | 4 .46 RPM | 21 .56 RPM |
bodymap2_colon | 1 .70 RPM | 24 .36 RPM |
bodymap2_heart | 1 .85 RPM | 15 .08 RPM |
bodymap2_kidney | 5 .01 RPM | 26 .53 RPM |
bodymap2_liver | 1 .41 RPM | 18 .42 RPM |
bodymap2_lung | 1 .95 RPM | 11 .76 RPM |
bodymap2_lymph_node | 3 .53 RPM | 26 .64 RPM |
bodymap2_ovary | 10 .72 RPM | 40 .33 RPM |
bodymap2_prostate | 3 .46 RPM | 23 .17 RPM |
bodymap2_skeletal_muscle | 1 .36 RPM | 53 .02 RPM |
bodymap2_testis | 5 .94 RPM | 82 .29 RPM |
bodymap2_thyroid | 9 .15 RPM | 33 .90 RPM |
bodymap2_white_blood_cells | 6 .24 RPM | 26 .54 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF001VKU | POLR2A | 3:122134727..122135393 |
ENCFF002CFW | POLR2A | 3:122134724..122135446 |
ENCFF002CFX | POLR2A | 3:122134736..122135449 |
ENCFF002CGN | POLR2A | 3:122134709..122135407 |
ENCFF002CHO | POLR2A | 3:122134582..122135550 |
ENCFF002CIH | POLR2A | 3:122134942..122135410 |
ENCFF002CIO | POLR2A | 3:122134676..122135440 |
ENCFF002CJE | POLR2A | 3:122134877..122135464 |
ENCFF002CJZ | POLR2A | 3:122134691..122135516 |
ENCFF002CKX | POLR2A | 3:122134710..122135424 |
ENCFF002CLM | POLR2A | 3:122134848..122135388 |
ENCFF002CMI | POLR2A | 3:122134672..122135516 |
ENCFF002COJ | POLR2A | 3:122134811..122135247 |
ENCFF002COJ | POLR2A | 3:122135028..122135464 |
ENCFF002CPG | POLR2A | 3:122134946..122135378 |
ENCFF002CPH | POLR2A | 3:122134919..122135309 |
ENCFF002CQA | POLR2A | 3:122134908..122135427 |
ENCFF002CQC | POLR2A | 3:122134736..122135426 |
ENCFF002CQE | POLR2A | 3:122134977..122135427 |
ENCFF002CQG | POLR2A | 3:122134973..122135416 |
ENCFF002CQI | POLR2A | 3:122134946..122135403 |
ENCFF002CQK | POLR2A | 3:122134692..122135433 |
ENCFF002CQM | POLR2A | 3:122134921..122135417 |
ENCFF002CQO | POLR2A | 3:122134681..122135454 |
ENCFF002CRK | POLR2A | 3:122134884..122135408 |
ENCFF002CRK | POLR2A | 3:122135084..122135608 |
ENCFF002CRO | POLR2A | 3:122135082..122135220 |
ENCFF002CSY | POLR2A | 3:122134646..122135528 |
ENCFF002CUP | POLR2A | 3:122135061..122135140 |
ENCFF002CUQ | POLR2A | 3:122134736..122135353 |
ENCFF002CVF | POLR2A | 3:122135028..122135219 |
ENCFF002CVJ | POLR2A | 3:122134791..122135339 |
ENCFF002CXM | POLR2A | 3:122134995..122135245 |
ENCFF002CXN | POLR2A | 3:122135017..122135273 |
ENCFF002CXO | POLR2A | 3:122135009..122135255 |
ENCFF002CXP | POLR2A | 3:122134922..122135326 |
ENCFF002CXQ | POLR2A | 3:122135062..122135712 |
ENCFF002CXR | POLR2A | 3:122134985..122135266 |
ENCFF002CZC | POLR2A | 3:122134653..122135584 |
ENCFF002CZD | POLR2A | 3:122134684..122135465 |
ENCFF002CZQ | POLR2A | 3:122134760..122135283 |
ENCFF002CZW | POLR2A | 3:122134549..122135499 |
ENCFF002CZY | POLR2A | 3:122134690..122135462 |
ENCFF002DAE | POLR2A | 3:122134972..122135282 |
ENCFF002DAE | POLR2A | 3:122134743..122135053 |
ENCFF002DAH | POLR2A | 3:122134984..122135268 |
ENCFF002DAK | POLR2A | 3:122135028..122135177 |
ENCFF002DAS | POLR2A | 3:122134874..122135350 |
ENCFF002DAV | POLR2A | 3:122134990..122135276 |
ENCFF002DAY | POLR2A | 3:122134997..122135321 |
ENCFF002DBB | POLR2A | 3:122135055..122135255 |
ENCFF002DBB | POLR2A | 3:122134787..122134987 |
ENCFF002DBE | POLR2A | 3:122134736..122135035 |
ENCFF002DBE | POLR2A | 3:122134924..122135206 |
ENCFF002DBO | POLR2A | 3:122134785..122135169 |
ENCFF002DBP | POLR2A | 3:122134824..122135016 |
ENCFF002DBP | POLR2A | 3:122134966..122135156 |
ENCFF002DBP | POLR2A | 3:122135222..122135386 |
ENCFF002DBQ | POLR2A | 3:122135011..122135267 |
ENCFF002DBT | POLR2A | 3:122135102..122135194 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 3 .08 RPM |
CEU_NA11843 | 2 .50 RPM |
CEU_NA11930 | 3 .26 RPM |
CEU_NA12004 | 1 .56 RPM |
CEU_NA12400 | 3 .58 RPM |
CEU_NA12751 | 4 .44 RPM |
CEU_NA12760 | 3 .50 RPM |
CEU_NA12827 | 2 .55 RPM |
CEU_NA12872 | 3 .92 RPM |
CEU_NA12873 | 3 .45 RPM |
FIN_HG00183 | 4 .34 RPM |
FIN_HG00277 | 3 .11 RPM |
FIN_HG00315 | 3 .64 RPM |
FIN_HG00321 | 3 .14 RPM |
FIN_HG00328 | 4 .07 RPM |
FIN_HG00338 | 2 .32 RPM |
FIN_HG00349 | 2 .50 RPM |
FIN_HG00375 | 3 .13 RPM |
FIN_HG00377 | 1 .99 RPM |
FIN_HG00378 | 3 .10 RPM |
GBR_HG00099 | 2 .76 RPM |
GBR_HG00111 | 3 .55 RPM |
GBR_HG00114 | 2 .45 RPM |
GBR_HG00119 | 4 .69 RPM |
GBR_HG00131 | 4 .34 RPM |
GBR_HG00133 | 4 .17 RPM |
GBR_HG00134 | 3 .45 RPM |
GBR_HG00137 | 3 .24 RPM |
GBR_HG00142 | 5 .00 RPM |
GBR_HG00143 | 3 .13 RPM |
TSI_NA20512 | 2 .52 RPM |
TSI_NA20513 | 4 .45 RPM |
TSI_NA20518 | 2 .41 RPM |
TSI_NA20532 | 2 .21 RPM |
TSI_NA20538 | 3 .18 RPM |
TSI_NA20756 | 2 .15 RPM |
TSI_NA20765 | 3 .38 RPM |
TSI_NA20771 | 2 .95 RPM |
TSI_NA20786 | 2 .22 RPM |
TSI_NA20798 | 3 .15 RPM |
YRI_NA18870 | 3 .45 RPM |
YRI_NA18907 | 2 .81 RPM |
YRI_NA18916 | 4 .06 RPM |
YRI_NA19093 | 2 .37 RPM |
YRI_NA19099 | 3 .70 RPM |
YRI_NA19114 | 2 .83 RPM |
YRI_NA19118 | 2 .51 RPM |
YRI_NA19213 | 2 .85 RPM |
YRI_NA19214 | 3 .05 RPM |
YRI_NA19223 | 4 .06 RPM |