RetrogeneDB ID: | retro_pcap_43 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_2094:60341..60835(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPCAG00000009309 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WDR5 | ||
Ensembl ID: | ENSPCAG00000013476 | ||
Aliases: | None | ||
Description: | WD repeat domain 5 [Source:HGNC Symbol;Acc:12757] |
Percent Identity: | 79.52 % |
Parental protein coverage: | 54.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS |
P..PNYAL.FTL.GHT.AVSSVKFSPNG.WLASSSADKLIKIW..YDGK.EKT..GH.L.ISDV.WSSDS | |
Retrocopy | PESPNYALQFTLVGHTEAVSSVKFSPNGDWLASSSADKLIKIWSVYDGKHEKTLCGHSLEISDVSWSSDS |
Parental | NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLP |
..LVSASDDKTL.IWDV.SGKCLKTLKGHSNYVFCCNFNP.SN.L..S......V.IW.VKTGKCLKTL. | |
Retrocopy | SRLVSASDDKTLTIWDVRSGKCLKTLKGHSNYVFCCNFNPASN<LVISDLSMRVVKIWEVKTGKCLKTLS |
Parental | AHSDPVSAVHFNRDGSLIVSSSYDGL |
AHSDPVSAVHFN..GSLIVS.SYDGL | |
Retrocopy | AHSDPVSAVHFNCSGSLIVSGSYDGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |