RetrogeneDB ID: | retro_etel_1310 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_245127:8878..9670(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SF3B4 | ||
Ensembl ID: | ENSETEG00000008963 | ||
Aliases: | None | ||
Description: | splicing factor 3b, subunit 4, 49kDa [Source:HGNC Symbol;Acc:10771] |
Percent Identity: | 91.67 % |
Parental protein coverage: | 62.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGS |
AMNGQYLCN.PIT.SYAFKKDSKGERHGSAAERL.AAQNPLS.ADRPHQLFADAPPPPSAPNPVVSSLGS | |
Retrocopy | AMNGQYLCNCPITMSYAFKKDSKGERHGSAAERLRAAQNPLSKADRPHQLFADAPPPPSAPNPVVSSLGS |
Parental | GLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPGHGHSHPHPFPPGG |
GLPPPGMPPPGSFPPPVPPPGALPPGIP.AMPPPPMPPGAGGHGP.SAGTPGAGHPGHGHSHPHPFPPGG | |
Retrocopy | GLPPPGMPPPGSFPPPVPPPGALPPGIPQAMPPPPMPPGAGGHGPQSAGTPGAGHPGHGHSHPHPFPPGG |
Parental | MPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPXXXXXXXXXXXXXXXXHPGPMPP |
MPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPP................HPGPMPP | |
Retrocopy | MPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRRPPFGSPMGHPGPMPP |
Parental | HGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLPQ |
HGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLPQ | |
Retrocopy | HGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012495 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000011617 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000000793 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000008267 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008963 | 1 retrocopy |
retro_etel_1310 ,
|
Homo sapiens | ENSG00000143368 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004761 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007256 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005563 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004614 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000912 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001243 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014171 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021181 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000684 | 2 retrocopies |