RetrogeneDB ID: | retro_rnor_2350 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:35074441..35075235(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Sf3b4 | ||
Ensembl ID: | ENSRNOG00000021181 | ||
Aliases: | None | ||
Description: | Splicing factor 3B subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6AYL5] |
Percent Identity: | 73.36 % |
Parental protein coverage: | 62.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKL-LYDTFSAFGVILQTP----K |
A.YAI.IMNMIKLYGKPI.VNKAS.HNKNLD..ANIF.GNLDPEI.EKL....TF......L..P....K | |
Retrocopy | ANYAIQIMNMIKLYGKPIWVNKASGHNKNLDLEANIFMGNLDPEINEKL<AFNTFTILPRHLEPP*RPPK |
Parental | IMRDPDTGNSK-GYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNP |
IMR.PDTG.SK.GYAF.NFASFDASDAA.EAMN...LCN.P.TVS.AFKKDSKG.RH.SAAE.LLAAQNP | |
Retrocopy | IMRGPDTGYSK<GYAFSNFASFDASDAAVEAMN---LCNCPVTVS*AFKKDSKGKRHDSAAEQLLAAQNP |
Parental | LSQADRPHQLFADA-PPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPG |
LSQA..PHQLFAD..PPPPSA.N..VSSLG.GLP.PGMP.P.SFP.PVP..GALPPG.P...PPPP.P.G | |
Retrocopy | LSQANHPHQLFADV>PPPPSATNSQVSSLGFGLPSPGMPSPESFPSPVPLLGALPPGKPLTIPPPPVPRG |
Parental | AGGHGPPAAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQP |
A.GHGPPAAG...A.HPG.GHS.P.PFPPGGMPH.GMSQMQL.HHGPH.LGH.HA.P.GS.GQP | |
Retrocopy | ARGHGPPAAG---AEHPGQGHSFPLPFPPGGMPHLGMSQMQLDHHGPHDLGHLHAWPSGSRGQP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 35 .45 RPM |
SRP017611_liver | 0 .00 RPM | 10 .49 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012495 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000011617 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000000793 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000008267 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008963 | 1 retrocopy | |
Homo sapiens | ENSG00000143368 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004761 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007256 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005563 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004614 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000912 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001243 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014171 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021181 | 1 retrocopy |
retro_rnor_2350 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000000684 | 2 retrocopies |