Parental gene: | SF3B4, ENSCJAG00000000793 |
| Aliases: | None |
| Description: | splicing factor 3b, subunit 4, 49kDa [Source:HGNC Symbol;Acc:10771] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 18:3887766..3894462(-) |
>ENSCJAG00000000793
ATGGCTGCCGGGCCGATCTCCGAGCGGAACCAGGATGCCACTGTGTACGTCGGGGGCCTGGATGAGAAGGTTAGTGAACC
GCTGCTGTGGGAACTGTTTCTCCAGGCTGGACCGGTAGTCAACACCCACATGCCAAAGGATAGAGTCACTGGCCAGCACC
AAGGCTATGGCTTTGTGGAATTCTTGAGTGAGGAAGATGCAGACTATGCCATTAAGATCATGAACATGATCAAACTCTAT
GGGAAGCCAATACGGGTGAACAAGGCATCAGCTCACAACAAAAACCTGGATGTAGGGGCCAACATTTTCATTGGCAACCT
GGACCCTGAGATTGATGAGAAGTTGCTTTATGATACTTTCAGCGCCTTTGGGGTCATCTTACAAACCCCTAAGATTATGC
GGGACCCTGACACAGGCAACTCCAAAGGTTATGCCTTTATTAATTTTGCTTCATTTGATGCTTCGGATGCAGCAATTGAA
GCCATGAATGGGCAGTACCTCTGTAACCGCCCTATCACTGTATCTTACGCCTTCAAGAAGGACTCCAAGGGTGAGCGCCA
TGGCTCAGCAGCTGAACGACTTTTGGCAGCTCAGAACCCACTCTCCCAGGCTGACCGTCCTCATCAGCTGTTTGCAGATG
CGCCTCCTCCACCCTCTGCCCCCAATCCTGTGGTATCATCACTGGGGTCTGGGCTTCCTCCACCAGGCATGCCTCCTCCT
GGCTCCTTCCCACCCCCAGTGCCGCCTCCTGGAGCCCTCCCACCTGGGATACCTCCAGCCATGCCCCCACCACCTATGCC
GCCTGGGGCTGCAGGACACGGCCCCCCGTCGGCAGGAACCCCAGGGGCAGGACATCCTGGTCATGGACACTCACATCCTC
ATCCATTCCCACCAGGTGGGATGCCCCATCCAGGGATGACTCAGATGCAGCTGGCACACCATGGCCCTCATGGCTTGGGA
CATCCCCATGCTGGACCCCCAGGCTCTGGGGGGCAGCCACCGCCCCGACCACCACCTGGAATGCCTCATCCTGGACCTCC
TCCAATGGGCATGCCCCCCCGAGGGCCTCCATTCGGATCTCCCATGGGTCACCCAGGTCCTATGCCTCCACATGGTATGC
GTGGACCTCCTCCACTGATGCCCCCCCATGGATACACTGGCCCTCCACGACCCCCACCCTATGGCTACCAGCGGGGGCCT
CTCCCTCCACCCAGACCCACTCCCCGGCCACCAGTTCCCCCTCGAGGCCCGCTTCGGGGCCCTCTCCCTCAGTAA
ATGGCTGCCGGGCCGATCTCCGAGCGGAACCAGGATGCCACTGTGTACGTCGGGGGCCTGGATGAGAAGGTTAGTGAACC
GCTGCTGTGGGAACTGTTTCTCCAGGCTGGACCGGTAGTCAACACCCACATGCCAAAGGATAGAGTCACTGGCCAGCACC
AAGGCTATGGCTTTGTGGAATTCTTGAGTGAGGAAGATGCAGACTATGCCATTAAGATCATGAACATGATCAAACTCTAT
GGGAAGCCAATACGGGTGAACAAGGCATCAGCTCACAACAAAAACCTGGATGTAGGGGCCAACATTTTCATTGGCAACCT
GGACCCTGAGATTGATGAGAAGTTGCTTTATGATACTTTCAGCGCCTTTGGGGTCATCTTACAAACCCCTAAGATTATGC
GGGACCCTGACACAGGCAACTCCAAAGGTTATGCCTTTATTAATTTTGCTTCATTTGATGCTTCGGATGCAGCAATTGAA
GCCATGAATGGGCAGTACCTCTGTAACCGCCCTATCACTGTATCTTACGCCTTCAAGAAGGACTCCAAGGGTGAGCGCCA
TGGCTCAGCAGCTGAACGACTTTTGGCAGCTCAGAACCCACTCTCCCAGGCTGACCGTCCTCATCAGCTGTTTGCAGATG
CGCCTCCTCCACCCTCTGCCCCCAATCCTGTGGTATCATCACTGGGGTCTGGGCTTCCTCCACCAGGCATGCCTCCTCCT
GGCTCCTTCCCACCCCCAGTGCCGCCTCCTGGAGCCCTCCCACCTGGGATACCTCCAGCCATGCCCCCACCACCTATGCC
GCCTGGGGCTGCAGGACACGGCCCCCCGTCGGCAGGAACCCCAGGGGCAGGACATCCTGGTCATGGACACTCACATCCTC
ATCCATTCCCACCAGGTGGGATGCCCCATCCAGGGATGACTCAGATGCAGCTGGCACACCATGGCCCTCATGGCTTGGGA
CATCCCCATGCTGGACCCCCAGGCTCTGGGGGGCAGCCACCGCCCCGACCACCACCTGGAATGCCTCATCCTGGACCTCC
TCCAATGGGCATGCCCCCCCGAGGGCCTCCATTCGGATCTCCCATGGGTCACCCAGGTCCTATGCCTCCACATGGTATGC
GTGGACCTCCTCCACTGATGCCCCCCCATGGATACACTGGCCCTCCACGACCCCCACCCTATGGCTACCAGCGGGGGCCT
CTCCCTCCACCCAGACCCACTCCCCGGCCACCAGTTCCCCCTCGAGGCCCGCTTCGGGGCCCTCTCCCTCAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 3 .97 RPM |
| SRP051959_skeletal_muscle | 2 .51 RPM |
| SRP051959_lymph_node | 5 .14 RPM |
| SRP051959_lung | 5 .08 RPM |
| SRP051959_liver | 2 .49 RPM |
| SRP051959_kidney | 4 .13 RPM |
| SRP051959_heart | 3 .07 RPM |
| SRP051959_colon | 3 .93 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000012495 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000011617 | ortholog_one2one | 3 retrogenes | |
| Cavia porcellus | ENSCPOG00000008267 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000008963 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000143368 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000004761 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000007256 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000005563 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000004614 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000000912 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000001243 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000014171 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000021181 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000000684 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_638 | 96.00 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1297 | 94.56 | 55.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1909 | 78.95 | 93.63 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000000793 retrocopies