Parental gene:

MMU.9983, ENSMMUG00000007256

Aliases:None
Description:splicing factor 3B subunit 4 [Source:RefSeq peptide;Acc:NP_001248161]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:1:128275889..128281143(-)


>ENSMMUG00000007256
ATGGCTGCCGGGCCGATCTCCGAGCGGAACCAGGATGCCACTGTGTACGTGGGGGGCCTGGATGAGAAGGTTAGTGAACC
ACTGCTGTGGGAACTGTTTCTCCAGGCTGGACCAGTAGTCAACACCCACATGCCAAAGGATAGAGTCACTGGCCAGCACC
AAGGCTATGGCTTTGTGGAATTCTTGAGTGAGGAAGATGCTGACTATGCCATTAAGATCATGAACATGATCAAACTCTAT
GGGAAGCCAATACGGGTGAACAAAGCATCAGCCCACAACAAAAACCTGGATGTAGGGGCCAACATTTTCATTGGGAACCT
GGACCCTGAGATTGATGAGAAGTTGCTTTATGATACTTTCAGTGCTTTTGGGGTCATCTTACAAACCCCCAAGATTATGC
GGGACCCTGACACAGGCAACTCCAAAGGTTATGCCTTTATTAATTTTGCTTCATTTGATGCTTCGGATGCAGCAATTGAA
GCCATGAATGGGCAGTACCTCTGTAACCGCCCTATCACCGTATCTTATGCCTTCAAGAAGGACTCCAAGGGTGAGCGCCA
TGGCTCAGCAGCCGAACGACTTCTGGCAGCTCAGAACCCGCTCTCCCAGGCTGACCGCCCTCATCAGCTGTTTGCAGATG
CACCTCCTCCACCCTCTGCCCCCAATCCTGTGGTATCATCATTGGGGTCTGGGCTTCCTCCACCAGGCATGCCTCCTCCT
GGCTCCTTCCCACCCCCAGTGCCACCTCCTGGAGCCCTCCCACCTGGGATACCCCCAGCCATGCCCCCACCACCTATGCC
TCCTGGAGCTGCAGGACATGGCCCCCCATCGGCAGGAACCCCAGGGGCAGGACATCCTGGTCATGGACACTCACATCCTC
ACCCATTCCCACCAGGTGGGATGCCCCATCCAGGGATGTCTCAGATGCAGCTGGCACACCATGGCCCTCATGGCTTAGGA
CATCCCCACGCTGGACCCCCAGGCTCTGGGGGGCAGCCACCACCCCGACCACCACCTGGAATGCCTCATCCTGGACCTCC
TCCAATGGGTATGCCCCCCCGAGGGCCTCCATTCGGATCTCCCATGGGTCACCCAGGTCCTATGCCTCCGCATGGTATGC
GTGGACCTCCTCCACTGATGCCCCCACATGGATACACTGGCCCTCCACGACCCCCACCCTATGGCTACCAGCGGGGGCCT
CTCCCTCCACCCAGACCCACTCCCCGGCCACCAGTTCCCCCTCGAGGTCCACTTCGAGGCCCTCTCCCTCAGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 25 .54 RPM
SRP007412_brain 18 .15 RPM
SRP007412_cerebellum 16 .27 RPM
SRP007412_heart 10 .25 RPM
SRP007412_kidney 18 .31 RPM
SRP007412_liver 15 .48 RPM
SRP007412_testis 57 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012495 ortholog_one2one 2 retrogenes
retro_btau_1385, retro_btau_592,
Canis familiaris ENSCAFG00000011617 ortholog_one2one 3 retrogenes
retro_cfam_585, retro_cfam_711, retro_cfam_729,
Callithrix jacchus ENSCJAG00000000793 ortholog_one2one 3 retrogenes
retro_cjac_1297, retro_cjac_1909, retro_cjac_638,
Cavia porcellus ENSCPOG00000008267 ortholog_one2one 1 retrogene
retro_cpor_234,
Echinops telfairi ENSETEG00000008963 ortholog_one2one 1 retrogene
retro_etel_1310,
Homo sapiens ENSG00000143368 ortholog_one2one 1 retrogene
retro_hsap_1356,
Gorilla gorilla ENSGGOG00000004761 ortholog_one2one 1 retrogene
retro_ggor_1056,
Mustela putorius furo ENSMPUG00000005563 ortholog_one2one 2 retrogenes
retro_mputfur_1105, retro_mputfur_648,
Oryctolagus cuniculus ENSOCUG00000004614 ortholog_one2one 1 retrogene
retro_ocun_1239,
Pongo abelii ENSPPYG00000000912 ortholog_one2one 1 retrogene
retro_pabe_1124,
Pan troglodytes ENSPTRG00000001243 ortholog_one2one 1 retrogene
retro_ptro_930,
Pteropus vampyrus ENSPVAG00000014171 ortholog_one2one 1 retrogene
retro_pvam_931,
Rattus norvegicus ENSRNOG00000021181 ortholog_one2one 1 retrogene
retro_rnor_2350,
Ictidomys tridecemlineatus ENSSTOG00000000684 ortholog_one2one 2 retrogenes
retro_itri_1153, retro_itri_487,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_2191 83.87 72.41
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Download FASTA sequences of all ENSMMUG00000007256 retrocopies