RetrogeneDB ID: | retro_ggor_1056 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 14:48289470..48290733(+) | ||
Located in intron of: | ENSGGOG00000003117 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SF3B4 | ||
Ensembl ID: | ENSGGOG00000004761 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.19 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFV-EFLSEEDADY |
MA..PISERNQDATVY.GGL.EKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGY.FV.EFLSE.DADY | |
Retrocopy | MATRPISERNQDATVYMGGLNEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYDFV<EFLSEDDADY |
Parental | AIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG |
AIKIMNMI.LYGKPIRVNKASAH.KNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIM.DPDTG | |
Retrocopy | AIKIMNMIRLYGKPIRVNKASAHDKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMWDPDTG |
Parental | NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQ |
NSKGYAFINFASFDAS.AAIEAMNGQYLCN.PITVSYAF.KDSKGERHG.AA.RLLAAQNP.SQ.DRPHQ | |
Retrocopy | NSKGYAFINFASFDASVAAIEAMNGQYLCNHPITVSYAFEKDSKGERHGLAAGRLLAAQNPFSQPDRPHQ |
Parental | LFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMP-PPPMPPGAAGHGPPSA |
LFADAPP.PSAPNPVV.SLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMP.PPPMPP.AAGHGPPSA | |
Retrocopy | LFADAPPSPSAPNPVV*SLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMP<PPPMPPEAAGHGPPSA |
Parental | GTPGAGHPGHGHSHPHPFPPGGMPHPVGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPP |
GTPGAGHPGHGHS..HPFPPGG.PHP.GMSQMQLAHHGPHGLGHPH.G.PGSGGQPPP.PPPGMPHPGPP | |
Retrocopy | GTPGAGHPGHGHSQAHPFPPGGVPHP-GMSQMQLAHHGPHGLGHPHSGHPGSGGQPPPQPPPGMPHPGPP |
Parental | PMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMP-PHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRG |
PMGMPPRGPPF.SPMGHPGPMPPHGMRG.PPLMP.PHGYTGPP.P.PYGYQ..PLPP.RPTP.PPV..RG | |
Retrocopy | PMGMPPRGPPF*SPMGHPGPMPPHGMRGLPPLMP<PHGYTGPPQPTPYGYQ--PLPPTRPTPQPPVASRG |
Parental | PLRGPLPQ |
.L..PLPQ | |
Retrocopy | LLWSPLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 21 .05 RPM |
SRP007412_cerebellum | 0 .20 RPM | 28 .88 RPM |
SRP007412_heart | 0 .00 RPM | 10 .23 RPM |
SRP007412_kidney | 0 .00 RPM | 20 .98 RPM |
SRP007412_liver | 0 .00 RPM | 14 .96 RPM |
SRP007412_testis | 17 .61 RPM | 49 .94 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1356 |
Pan troglodytes | retro_ptro_930 |
Macaca mulatta | retro_mmul_2191 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012495 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000011617 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000000793 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000008267 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008963 | 1 retrocopy | |
Homo sapiens | ENSG00000143368 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004761 | 1 retrocopy |
retro_ggor_1056 ,
|
Gorilla gorilla | ENSGGOG00000009941 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007256 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005563 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004614 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000912 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001243 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014171 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021181 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000684 | 2 retrocopies |