RetrogeneDB ID: | retro_itri_487 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393295.1:8412075..8413262(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SF3B4 | ||
Ensembl ID: | ENSSTOG00000000684 | ||
Aliases: | None | ||
Description: | splicing factor 3b, subunit 4, 49kDa [Source:HGNC Symbol;Acc:10771] |
Percent Identity: | 79.12 % |
Parental protein coverage: | 94.34 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | MAAGPISERNQDATVYVGGL-DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFV-EFLSEEDAD |
M.AGPISE.N.DATVY.G...DE.VSEPLL.ELFLQAGP.VNTHMPKDRVTGQHQGYGF..EFLSEEDAD | |
Retrocopy | MTAGPISEWN*DATVYMGLV<DE-VSEPLL*ELFLQAGPMVNTHMPKDRVTGQHQGYGFL>EFLSEEDAD |
Parental | YAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDT |
YAIKIMNMI.LYG.PI..NKASAH.KNLDVGANIF.GNLD.EIDEKLL.DTFS.FGVILQ.PKI.RDPD. | |
Retrocopy | YAIKIMNMIQLYGQPICINKASAHSKNLDVGANIFTGNLDSEIDEKLLDDTFSVFGVILQSPKITRDPDI |
Parental | GNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPH |
.NSKG.AFINFAS.DASDAAIEAMNG.YLC..PITVSYAFKKDSKG.RHGSAAE.LLAA.NPLSQAD.PH | |
Retrocopy | SNSKGNAFINFASLDASDAAIEAMNGLYLCSHPITVSYAFKKDSKGQRHGSAAEQLLAAKNPLSQADCPH |
Parental | QLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSF-PPPVPPPGALPPGIPPAMPPPPMPPGAGGHGPPS |
QL.ADAP.PPSAPNPV.SSLGSGLPPPG.PPPGSF.P..VP.P.ALP.GIP.AM.PPPM.PGAG.HGPPS | |
Retrocopy | QLLADAPSPPSAPNPVASSLGSGLPPPGKPPPGSF<PTLVPLPVALPFGIPSAMSPPPMLPGAGRHGPPS |
Parental | AGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLA-HHGPHGLGHPHAGP-PGSGGQPP-PRPPPGMPHP |
AGTP..GHPGHGHS..HPFP.GGMPHPGMSQMQLA..HG...LGHPHA...P...G..P.P.PPPG.PHP | |
Retrocopy | AGTPEVGHPGHGHSNSHPFPQGGMPHPGMSQMQLA<PHG---LGHPHAVD<PPGSGGQPPPSPPPGRPHP |
Parental | GPPPMGMPPR-GPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGP |
GPPP.GMPP..GP.FGSP.GHPGPMPPHGM.G.PPLMPPHGYTG.P.P.P......P | |
Retrocopy | GPPPLGMPPE<GPLFGSPVGHPGPMPPHGMCGLPPLMPPHGYTGSPQPRPCTQTHAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012495 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000011617 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000000793 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000008267 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008963 | 1 retrocopy | |
Homo sapiens | ENSG00000143368 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004761 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007256 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005563 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004614 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000912 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001243 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014171 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021181 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000684 | 2 retrocopies |
retro_itri_1153, retro_itri_487 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000012459 | 1 retrocopy |