RetrogeneDB ID: | retro_mputfur_1105 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897017.1:2354745..2356004(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMPUG00000004988 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SF3B4 | ||
Ensembl ID: | ENSMPUG00000005563 | ||
Aliases: | None | ||
Description: | splicing factor 3b, subunit 4, 49kDa [Source:HGNC Symbol;Acc:10771] |
Percent Identity: | 65.75 % |
Parental protein coverage: | 99.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 12 |
Parental | AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQ-GYGFVEFLSEEDADYA |
AA..ISE.NQ.A..YVGGLD..V..P.LWEL.LQAGPVV...MPKD.VT.QHQ.G.GFVEFL..E.ADY. | |
Retrocopy | AARLISEQNQGAAIYVGGLDGEVGQPRLWELILQAGPVVTSRMPKDEVTDQHQ<GQGFVEFLDNEEADYT |
Parental | IKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKL-LYDTFSAFGVILQTPKIMRDPDT |
.KIMN.IKL.GK...V...SA..KNLDVG.AN...GNLD.E.D.KL..Y...SAFGVILQTP.I..DP.T | |
Retrocopy | TKIMNLIKLCGK---VDQTSAR-KNLDVG<ANVVVGNLDSEMDRKL<VYGISSAFGVILQTPEIVWDPNT |
Parental | GNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAER-LLAAQNP-LSQADR |
GNSK.YAFINF..FDA..AA....NG.YLCNRPITV..AF.KDSKG...GSAAE..L.A...P.LSQAD. | |
Retrocopy | GNSKDYAFINFVLFDALEAAVHVLNGHYLCNRPITVPCAFEKDSKGQHQGSAAEQLLAAQNQP>LSQADC |
Parental | PHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAGGHGPP |
P.QL.A..P.PPS.PN.V.SSLGSGLPP.G.PPP...PPPV.PPG...PGIPPA.PP.P..P.AGGHGPP | |
Retrocopy | PCQLLAESPSPPSTPNSVASSLGSGLPPSGSPPPRPLPPPVLPPGTILPGIPPARPPLPVSPEAGGHGPP |
Parental | SAG-TPGAGHPGHGHSHPHPFPPGGM-PHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHP |
S.G...G.GHPGHGHSHPH.F...GM.P..G.SQ.QLA.HGPHG.GHPH..P.GSGGQP.P.P.PGMPH. | |
Retrocopy | SSG<NAGSGHPGHGHSHPHQFSLYGM>PIQG-SQIQLAYHGPHGSGHPHSRPSGSGGQPSPQPSPGMPHL |
Parental | GPPPMGMPP---RGPPFGSPMGHPG-PMPPHGMRGPPPLMP-PHGYTGPP-RPPPYGYQ-RGPLPPPRPT |
GPP.MGMPP.....P.FGSP..HPG..MP.HGM.GPPP.MP.PHGYTG.P..PPP.GY...GPLPPPRPT | |
Retrocopy | GPPLMGMPPVPHQWPLFGSPTRHPG<SMPLHGMHGPPPRMP<PHGYTGLP>HPPPDGYR>GGPLPPPRPT |
Parental | -PRPPV-PPRGPLRGPLP |
.PRP.V..P.GPL....P | |
Retrocopy | <PRPLV<SPCGPLSDTFP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012495 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000011617 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000000793 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000008267 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008963 | 1 retrocopy | |
Homo sapiens | ENSG00000143368 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004761 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007256 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005563 | 2 retrocopies |
retro_mputfur_1105 , retro_mputfur_648,
|
Oryctolagus cuniculus | ENSOCUG00000004614 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000912 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001243 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014171 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021181 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000684 | 2 retrocopies |