RetrogeneDB ID: | retro_mmul_2191 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:130301446..130302360(+) | ||
Located in intron of: | ENSMMUG00000029318 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9983 | ||
Ensembl ID: | ENSMMUG00000007256 | ||
Aliases: | None | ||
Description: | splicing factor 3B subunit 4 [Source:RefSeq peptide;Acc:NP_001248161] |
Percent Identity: | 83.87 % |
Parental protein coverage: | 72.41 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERH |
DTFS.FGVILQTPKIM.DPDTGNSK.YAFINF.SFDASDAAIEAMNGQYLCN.PIT.SYAF.KDSKGERH | |
Retrocopy | DTFSTFGVILQTPKIMWDPDTGNSKAYAFINFTSFDASDAAIEAMNGQYLCNCPITISYAFRKDSKGERH |
Parental | GSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGI |
G.AA.RLLAAQN.LSQ.DRPHQLFADAPPPPSAPNPVV.SLGSGLPPPGMPP..SFP.PV.PPGALPPGI | |
Retrocopy | GLAAVRLLAAQNLLSQPDRPHQLFADAPPPPSAPNPVVLSLGSGLPPPGMPPLDSFPLPVLPPGALPPGI |
Parental | PPAMP-PPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGP |
PP.MP..PPMPPGAAGHGPPSAGTP.AG.P..GHS..HPFPPGG.P.PGMSQMQLAHHGPHGLGHPH.G. | |
Retrocopy | PPTMP<LPPMPPGAAGHGPPSAGTPEAGYPDYGHSRAHPFPPGGVPYPGMSQMQLAHHGPHGLGHPHSGH |
Parental | PGSGGQPPPRPPPGMPHPGPPPMGMPPR-GPPFGSPMGHPGPMPPHGMRGPPPLM-PPHGYTGPPRPPPY |
PGSG.QPPP.PPPGMPHPGPPP.GMPP..G.PFGS.MGHPGPM.PHGMRGPPPLM.PPH.YTGP.RP.PY | |
Retrocopy | PGSGEQPPPQPPPGMPHPGPPPIGMPPK<GSPFGSTMGHPGPMLPHGMRGPPPLM>PPHVYTGPARPTPY |
Parental | GYQRGPLPPPRPTPRPPVPPRGPLRGPLPQ |
GYQ..PLPPPRPTP.PPV.P...L..PLPQ | |
Retrocopy | GYQ--PLPPPRPTPQPPVAP*DLLWSPLPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 18 .15 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 25 .54 RPM |
SRP007412_cerebellum | 0 .06 RPM | 16 .27 RPM |
SRP007412_heart | 0 .06 RPM | 10 .25 RPM |
SRP007412_kidney | 0 .12 RPM | 18 .31 RPM |
SRP007412_liver | 0 .08 RPM | 15 .48 RPM |
SRP007412_testis | 0 .90 RPM | 57 .33 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1356 |
Pan troglodytes | retro_ptro_930 |
Gorilla gorilla | retro_ggor_1056 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012495 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000011617 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000000793 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000008267 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008963 | 1 retrocopy | |
Homo sapiens | ENSG00000143368 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004761 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007256 | 1 retrocopy |
retro_mmul_2191 ,
|
Mustela putorius furo | ENSMPUG00000005563 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004614 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000912 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001243 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014171 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021181 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000684 | 2 retrocopies |