RetrogeneDB ID: | retro_fcat_1375 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:136510325..136511488(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000022091 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.28 % |
Parental protein coverage: | 87.28 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | FSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE-DAANNYARGHYTIGREIVDLVLDR |
FSETGAGKH.PRAV.VDLE.TV.DEVRTGT..QLFHPEQLITGKE.DA.NNYA.GH.....EI.DLVLDR | |
Retrocopy | FSETGAGKHMPRAVLVDLESTVIDEVRTGTNSQLFHPEQLITGKE>DATNNYAQGHHNTDEEITDLVLDR |
Parental | IRKLADLCTGLQG-FLIFHSFGGTGSGFASLLMER-LSVDYGK-SKLEFAIYPAPQVSTAVVEPYNSILT |
..KLA...T.LQG.FL.F.S....G.G..S...E...SVDYGK.SKLEF...PAPQ.ST.V.EPYNSILT | |
Retrocopy | FQKLANQDTDLQG>FLVFPSY---GGGTSSSADES<ISVDYGKKSKLEFSNFPAPQISTVVAEPYNSILT |
Parental | THTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV |
.H..LEHSDC.F.VD.EAIYDIC.R.LDIE.PTY..L.RLI..IVSSITASLRFDG.LNV.LTEFQT.LV | |
Retrocopy | IHNNLEHSDCTFRVDSEAIYDICCRSLDIEHPTYSSLYRLID*IVSSITASLRFDGTLNVGLTEFQTHLV |
Parental | PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA-QMVKCDPRHGKYMACCMLYRGDVV-PKDVN |
PYP.I.F.LATYAPVISAEKA.H.QLS.AEITN..FEPA.QMVKCD.RHGK.MA.C.LY.G..V.PKD.N | |
Retrocopy | PYPHIYFSLATYAPVISAEKAHHKQLSIAEITNESFEPANQMVKCDLRHGKHMAYCLLYHGNMV>PKDAN |
Parental | AAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLARVQRAVCMLSNTTAIAEAWARLDHKFDLMY |
AAIATIKTK.T.QFVD.CP.G..VGINYQ.PTVVPG.DLA.VQ..VCMLS....IAEAW..L.H..DLMY | |
Retrocopy | AAIATIKTKCTTQFVD*CPIGPNVGINYQFPTVVPGRDLAKVQQDVCMLS---SIAEAWVCLNHTYDLMY |
Parental | AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVEAEAEE |
.K.AFV.WYV.EGM.EGEF..A.ED.AALEKDYE.VG.D.V..E.EE | |
Retrocopy | DKCAFVYWYVDEGMKEGEFPKACEDMAALEKDYEVVGMDCVGGEVEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .10 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011042 | 2 retrocopies | |
Equus caballus | ENSECAG00000014403 | 1 retrocopy | |
Felis catus | ENSFCAG00000022091 | 2 retrocopies |
retro_fcat_1375 , retro_fcat_647,
|
Felis catus | ENSFCAG00000024852 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000027277 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Mus musculus | ENSMUSG00000067338 | 1 retrocopy |