RetrogeneDB ID: | retro_fcat_596 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:190579169..190579990(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUBA4A | ||
Ensembl ID: | ENSFCAG00000027277 | ||
Aliases: | None | ||
Description: | tubulin, alpha 4a [Source:HGNC Symbol;Acc:12407] |
Percent Identity: | 73.29 % |
Parental protein coverage: | 57.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEP |
E.IS.HVGQAGVQ.G.ACWELY.LEH.IQP.GQM.SDKT.GGGDDSF.TFF.E.GAGK..PRAVF.DL.P | |
Retrocopy | EYISIHVGQAGVQIGSACWELYGLEHSIQPNGQMSSDKTTGGGDDSFNTFFNEMGAGKQMPRAVFADLKP |
Parental | TVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIID-PVLDRIRKLSDQCTGLQGFLVFHSF |
.VIDE...G.Y.Q.FH.EQL.T.KEDAANN..RGHYTIGKEI.D.P.L.RIRKL.DQCTGLQGFLVFHSF | |
Retrocopy | KVIDEVHTGTYFQFFHHEQLVTSKEDAANNDTRGHYTIGKEITD<PCL-RIRKLADQCTGLQGFLVFHSF |
Parental | GGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD |
GG.T.S.FT.L.ME..S.DY.KK..LEFS.YP.P.VSTAVVEPYN..LTTHTTLEH.DC.FMVDNE.IYD | |
Retrocopy | GGETSSMFTCL-MECFSLDYSKKFNLEFSFYPTPYVSTAVVEPYNYLLTTHTTLEHFDCTFMVDNETIYD |
Parental | ICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA |
IC.RNLDIE.P..TNLNRLISQ.VSSITASLR.DGALNVDLTEFQT.L.P.........T.A....A | |
Retrocopy | ICCRNLDIEHPNCTNLNRLISQTVSSITASLRYDGALNVDLTEFQTSLMPMVKAYHEQLTAAEITNA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 131 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 151 .91 RPM |
SRP017611_liver | 0 .00 RPM | 13 .55 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000000154 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000010296 | 2 retrocopies | |
Felis catus | ENSFCAG00000022091 | 2 retrocopies | |
Felis catus | ENSFCAG00000024852 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000027277 | 1 retrocopy |
retro_fcat_596 ,
|
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000010779 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000000804 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010798 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003597 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000019497 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010042 | 1 retrocopy |