RetrogeneDB ID: | retro_fcat_361 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:163696232..163697563(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000031275 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUBA1C | ||
Ensembl ID: | ENSFCAG00000024852 | ||
Aliases: | None | ||
Description: | tubulin, alpha 1c [Source:HGNC Symbol;Acc:20768] |
Percent Identity: | 56.39 % |
Parental protein coverage: | 99.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEP |
E.I.IHVGQAGVQ..N..WE.YCLEH.IQP.GQ.PSDKT.GGGD.SFN.FFSET........A.F.DLEP | |
Retrocopy | ERIAIHVGQAGVQVRNGRWEPYCLEHSIQPKGQVPSDKTTGGGDGSFNNFFSETSTRA---QASFGDLEP |
Parental | TVIDEVRTGTYRQLFHPE-QLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLXDLESGIQMTLLLRHV |
...DEV.TG...Q...P...L.TGK.DAANN...G.YTIGKEI..LVLDRI.KL.....G.Q..L..... | |
Retrocopy | GAVDEVHTGSHHQVYCPR<KLLTGKKDAANNHVPGPYTIGKEIMGLVLDRIQKLARQRTGLQGFLVSHSF |
Parental | GSLPGHNWSSLK--RMTLHHSQLHTFPDAYHTLPSKSMDPQEKYSEGLVENST-NRTSEKCLHGRH-EAI |
G..P.....SL...R..................P..S....E.Y...L.......R....CL.GR..EAI | |
Retrocopy | GGGPVSRITSLPVHRLSVDYGEKPELELSTYAVPKVSTAVVEPYNSILTTHTALERAL*LCLLGRR>EAI |
Parental | YDICRRNLDIERPTY-TNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA |
YDICRRNL....PT..T.LNR.ISQ..SS..ASL.FDGAL.VD..EF.T.LVPYP.IH.P.ATYAPVISA | |
Retrocopy | YDICRRNLSTKHPTWATDLNRWISQTASSVAASLGFDGALSVDPREFRTDLVPYPHIHVPVATYAPVISA |
Parental | EKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCP |
E.A..EQ..VAEI..A.F..ANQ.V..DPR.GKY.ACC.LY.G...PKD..AAIA....K.T.QF.DWCP | |
Retrocopy | ERACCEQHPVAEIIDASFKSANQTVRRDPRRGKYVACCPLYSGPMLPKDASAAIAAFESKSTVQFGDWCP |
Parental | TGFKVGINYQPPTVVPGGDLAKVQRAVCML-SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGE |
.GF.V.I...PPTV.P.GD..KVQRA.CML...TTAI.E.WA.LDHKFD.MYA..A.VHWYVG.G.EE.. | |
Retrocopy | AGFRVAISNLPPTVLPAGDPTKVQRAMCML<ESTTAIPETWAHLDHKFDPMYARHALVHWYVGRGTEE-- |
Parental | FSEAREDMAALEKDYEEVGADS--AEGEDEGEEY |
..EA.E..AALEKD.EEVG.DS...EGE..GEE. | |
Retrocopy | --EAHENTAALEKDSEEVGVDSVAGEGEEGGEEH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 40 .71 RPM |
SRP017611_liver | 0 .00 RPM | 2 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000039992 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000008661 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000008444 | 2 retrocopies | |
Equus caballus | ENSECAG00000009504 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000004068 | 1 retrocopy | |
Felis catus | ENSFCAG00000022091 | 2 retrocopies | |
Felis catus | ENSFCAG00000024852 | 1 retrocopy |
retro_fcat_361 ,
|
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000027277 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000010779 | 2 retrocopies | |
Mus musculus | ENSMUSG00000043091 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000028032 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009435 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000004646 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015544 | 3 retrocopies |