RetrogeneDB ID: | retro_ggor_169 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 6:54831266..54831644(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000027639 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSGGOG00000006432 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.64 % |
Parental protein coverage: | 96.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWA |
K.G....KG.SAINEVV..EYTINIHKRIHGV.FKKRAPRALKEI.KFAMKE..T.DVRID.R.NKA..A | |
Retrocopy | KEGWREAKGHSAINEVVIQEYTINIHKRIHGVRFKKRAPRALKEIPKFAMKEVETLDVRIDSRFNKALCA |
Parental | KGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
KGIRNVPYRIRVRLSRKRNEDEDSPNK.YTLVTYVPV.TFKN.QTV.VDEN | |
Retrocopy | KGIRNVPYRIRVRLSRKRNEDEDSPNKRYTLVTYVPVSTFKNVQTVHVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 115 .33 RPM |
SRP007412_cerebellum | 0 .04 RPM | 89 .63 RPM |
SRP007412_heart | 0 .00 RPM | 55 .72 RPM |
SRP007412_kidney | 0 .00 RPM | 292 .60 RPM |
SRP007412_liver | 0 .03 RPM | 317 .14 RPM |
SRP007412_testis | 0 .00 RPM | 156 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3471 |
Pongo abelii | retro_pabe_106 |