RetrogeneDB ID: | retro_mdom_1674 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 6:124014768..124015064(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSMODG00000001704 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 67. % |
Parental protein coverage: | 79.2 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW-AKGIRNVPYR |
S..N.VVTR.YTIN.HK.I..V..K..AP.A.KEI.KFAMKEMGTP...I.T.LNKAV...KGIRNV.Y. | |
Retrocopy | SVFN*VVTRDYTINVHKWIRKVVLKNGAPQAPKEICKFAMKEMGTPGIHIITKLNKAVE<VKGIRNVLYH |
Parental | IRVRLSRKRNEDEDSPNKLYTLVTYVPVTT |
I.V.LSRK..EDEDS.NKLYTL.T.VP.TT | |
Retrocopy | I*VSLSRKHSEDEDSSNKLYTLMTCVPLTT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |