RetrogeneDB ID: | retro_ggor_2547 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 7:129638000..129638366(+) | ||
Located in intron of: | ENSGGOG00000000858 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSGGOG00000006432 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.74 % |
Parental protein coverage: | 99.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MAPAKK-GGEKKKGRSAINEVVTREYTINIHK-RIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRL |
MAPAK..GGEKK.G.S.INEVVTRE.TIN..K....GVGFK..AP.AL.EI.KFAMKEMGTPDVRIDTRL | |
Retrocopy | MAPAKR<GGEKK-GHSTINEVVTRECTINNPK<ELPGVGFKQHAPQALTEIQKFAMKEMGTPDVRIDTRL |
Parental | NKAVWAKGIRNVPY-RIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDE |
.KAVWAKGI.NVPY..I.V.LSRK.NEDEDSPNKLYTLVT.VPVTTFKNL.TV.VDE | |
Retrocopy | IKAVWAKGIKNVPY<PIPVQLSRKQNEDEDSPNKLYTLVTHVPVTTFKNL*TVSVDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 115 .33 RPM |
SRP007412_cerebellum | 0 .00 RPM | 89 .63 RPM |
SRP007412_heart | 0 .03 RPM | 55 .72 RPM |
SRP007412_kidney | 0 .04 RPM | 292 .60 RPM |
SRP007412_liver | 0 .00 RPM | 317 .14 RPM |
SRP007412_testis | 0 .00 RPM | 156 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3788 |