Parental gene:

RPL31, ENSSHAG00000011706

Aliases:None
Description:ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL849833.1:891158..894789(+)


>ENSSHAG00000011706
ATGGCTCCCGCAAAGAAAGGTGGAGAGAAAAAGAAGGGACGTTCTGCCATCAACGAGGTGGTGACCAGAGAGTATACTAT
CAACATTCACAAGAGGATTCATGGCGTAGGCTTCAAAAAACGAGCTCCTCGGGCTCTGAAGGAAATCCGCAAATTTGCCA
TGAAAGAAATGGGAACTCCAGATGTACGCATTGACACCAGACTTAACAAAGCTGTTTGGGCCAAAGGAATAAGGAATGTT
CCATACCGTATCCGAGTGCGTTTGTCCAGGAAACGCAATGAGGATGAAGATTCACCAAACAAGCTGTATACGTTGGTTAC
TTACGTGCCTGTCACCACTTTCAAAAGCTTACAGACAGTCAATGTGGATGAAAACTAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000007914 ortholog_one2one 1 retrogene
retro_acar_168,
Ailuropoda melanoleuca ENSAMEG00000015647 possible_ortholog 2 retrogenes
retro_amel_12, retro_amel_222,
Bos taurus ENSBTAG00000019701 possible_ortholog 9 retrogenes
retro_btau_1043, retro_btau_1100, retro_btau_1553, retro_btau_160, retro_btau_1777, retro_btau_1783, retro_btau_409, retro_btau_524, retro_btau_867,
Felis catus ENSFCAG00000026430 possible_ortholog 13 retrogenes
retro_fcat_1420, retro_fcat_148, retro_fcat_17, retro_fcat_190, retro_fcat_1957, retro_fcat_2003, retro_fcat_251, retro_fcat_46, retro_fcat_466, retro_fcat_658, retro_fcat_725, retro_fcat_803, retro_fcat_881,
Gorilla gorilla ENSGGOG00000006432 possible_ortholog 24 retrogenes
retro_ggor_1047, retro_ggor_113, retro_ggor_1442, retro_ggor_169, retro_ggor_1811, retro_ggor_1839, retro_ggor_192, retro_ggor_1971, retro_ggor_21, retro_ggor_2132, retro_ggor_2383, retro_ggor_2541, retro_ggor_2547, retro_ggor_2625, retro_ggor_2820, retro_ggor_442, retro_ggor_583, retro_ggor_655, retro_ggor_834, retro_ggor_84, retro_ggor_849, retro_ggor_874, retro_ggor_88, retro_ggor_997,
Latimeria chalumnae ENSLACG00000013603 ortholog_one2one 1 retrogene
retro_lcha_94,
Loxodonta africana ENSLAFG00000027873 possible_ortholog 12 retrogenes
retro_lafr_118, retro_lafr_187, retro_lafr_20, retro_lafr_245, retro_lafr_307, retro_lafr_56, retro_lafr_663, retro_lafr_703, retro_lafr_710, retro_lafr_778, retro_lafr_885, retro_lafr_926,
Microcebus murinus ENSMICG00000016059 possible_ortholog 15 retrogenes
retro_mmur_1018, retro_mmur_1028, retro_mmur_1080, retro_mmur_130, retro_mmur_1320, retro_mmur_1369, retro_mmur_1386, retro_mmur_1606, retro_mmur_1617, retro_mmur_476, retro_mmur_506, retro_mmur_538, retro_mmur_639, retro_mmur_796, retro_mmur_996,
Myotis lucifugus ENSMLUG00000002507 ortholog_one2one 21 retrogenes
retro_mluc_1072, retro_mluc_1135, retro_mluc_1239, retro_mluc_1301, retro_mluc_1406, retro_mluc_1470, retro_mluc_1666, retro_mluc_1678, retro_mluc_1896, retro_mluc_1913, retro_mluc_2028, retro_mluc_2124, retro_mluc_2126, retro_mluc_269, retro_mluc_303, retro_mluc_463, retro_mluc_767, retro_mluc_782, retro_mluc_914, retro_mluc_922, retro_mluc_997,
Macaca mulatta ENSMMUG00000009873 possible_ortholog 1 retrogene
retro_mmul_340,
Monodelphis domestica ENSMODG00000001704 ortholog_one2one 5 retrogenes
retro_mdom_1052, retro_mdom_1464, retro_mdom_1674, retro_mdom_1720, retro_mdom_1818,
Mustela putorius furo ENSMPUG00000012197 possible_ortholog 2 retrogenes
retro_mputfur_50, retro_mputfur_71,
Nomascus leucogenys ENSNLEG00000014444 possible_ortholog 2 retrogenes
retro_nleu_47, retro_nleu_530,
Oryctolagus cuniculus ENSOCUG00000002392 possible_ortholog 9 retrogenes
retro_ocun_1070, retro_ocun_1074, retro_ocun_1161, retro_ocun_117, retro_ocun_1366, retro_ocun_206, retro_ocun_64, retro_ocun_941, retro_ocun_99,
Otolemur garnettii ENSOGAG00000014494 possible_ortholog 10 retrogenes
retro_ogar_103, retro_ogar_143, retro_ogar_150, retro_ogar_178, retro_ogar_181, retro_ogar_186, retro_ogar_262, retro_ogar_271, retro_ogar_29, retro_ogar_3,
Pongo abelii ENSPPYG00000025870 possible_ortholog 4 retrogenes
retro_pabe_106, retro_pabe_1635, retro_pabe_168, retro_pabe_895,
Rattus norvegicus ENSRNOG00000013508 possible_ortholog 8 retrogenes
retro_rnor_101, retro_rnor_152, retro_rnor_1809, retro_rnor_217, retro_rnor_22, retro_rnor_267, retro_rnor_277, retro_rnor_286,
Sus scrofa ENSSSCG00000008170 possible_ortholog 4 retrogenes
retro_sscr_1072, retro_sscr_1073, retro_sscr_128, retro_sscr_263,
Sus scrofa ENSSSCG00000025180 possible_ortholog 6 retrogenes
retro_sscr_20, retro_sscr_34, retro_sscr_469, retro_sscr_501, retro_sscr_713, retro_sscr_81,
Ictidomys tridecemlineatus ENSSTOG00000010902 possible_ortholog 15 retrogenes
retro_itri_1068, retro_itri_1074, retro_itri_1077, retro_itri_1140, retro_itri_1142, retro_itri_1223, retro_itri_1467, retro_itri_1570, retro_itri_1634, retro_itri_1791, retro_itri_1900, retro_itri_298, retro_itri_450, retro_itri_680, retro_itri_76,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_190 53.85 80.00
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2. retro_shar_285 60.92 69.60
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3. retro_shar_721 61.07 100.00
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Download FASTA sequences of all ENSSHAG00000011706 retrocopies