RetrogeneDB ID:

retro_ggor_997

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:13:39706420..39706626(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL31
Ensembl ID:ENSGGOG00000006432
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_997
ACAAGAGAATGATCAGAAGATACTCATAAATGCACTTGTGGAGTGGGGTTCAAGAAGCATGTTCCTTGACAACTCAGAGA
GATCCAGAAATTTTCCATGAAGAAGATGGAAATGCCAGATGTACTACTGACACCAGGCTCAACAAAGTTGTTTGAGCCAA
AGAAATAAGGAATCTCCCATACCATATTTATGAGCGATTGTCCAAA

ORF - retro_ggor_997 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.57 %
Parental protein coverage: 55.2 %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRI-DTRLNKAVWAKGIRNVPYRIRVRLSR
TRE.....HK...GVGFKK..P..L.EI.KF.MK.M..PDV...DTRLNK.V.AK.IRN.PY.I..RLS.
RetrocopyTRE*SEDTHKCTCGVGFKKHVP*QLREIQKFSMKKMEMPDVLL<DTRLNKVV*AKEIRNLPYHIYERLSK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 115 .33 RPM
SRP007412_cerebellum 0 .00 RPM 89 .63 RPM
SRP007412_heart 0 .00 RPM 55 .72 RPM
SRP007412_kidney 0 .00 RPM 292 .60 RPM
SRP007412_liver 0 .00 RPM 317 .14 RPM
SRP007412_testis 0 .00 RPM 156 .44 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_997 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_997 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_1269
Equus caballus retro_ecab_414

Parental genes homology:
Parental genes homology involve 10 parental genes, and 111 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000079141 retrocopy
Homo sapiens ENSG0000007108245 retrocopies
Gorilla gorilla ENSGGOG00000006432 24 retrocopies
Latimeria chalumnae ENSLACG000000136031 retrocopy
Macropus eugenii ENSMEUG000000009638 retrocopies
Myotis lucifugus ENSMLUG0000000250721 retrocopies
Macaca mulatta ENSMMUG000000098731 retrocopy
Monodelphis domestica ENSMODG000000017045 retrocopies
Nomascus leucogenys ENSNLEG000000144442 retrocopies
Sarcophilus harrisii ENSSHAG000000117063 retrocopies



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