RetrogeneDB ID:

retro_ggor_632

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:11:25968738..25969039(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ATP6V1G1
Ensembl ID:ENSGGOG00000004011
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_632
ATGGTATCTCAGGCTGCTGCCATGGCAAGTCAGTTGCAGGTGATCCAGTAGCTGTTGCAGGCAGAGGTGATGGAGGCCCA
CAAGCCAAATAAACAGAGGCTGACCCAGGCCAAAGAAGCTAAGGCTGAAATTGAGCAGTACCTCCTGCAGAGGGAGAAGA
GTTCAAGGCCAAGAAACCCATGCACTGGGATCATAGGGCAGTTGCAGCACTGAAGTGGAGGAGAACTAGGAGAAGATGAT
CATCTTCCATAACTACTTCAGGCAGAACAGGGATGAAGGCTTGGGTCACTTGTTGGTCTTT

ORF - retro_ggor_632 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.05 %
Parental protein coverage: 86.44 %
Number of stop codons detected: 3
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMASQSQGIQQLLQAEKRAAE-KVSEARKRKNRRLKQAKEEAQAEIEQYRLQREK-EFKAK-EAAALGSRG
M.SQ.......LQ.........V.EA.K....RL.QAKE.A.AEIEQY.LQREK.EFKAK.E..ALGS.G
RetrocopyMVSQAAAMASQLQVIQ*LLQAEVMEAHKPNKQRLTQAKE-AKAEIEQYLLQREK<EFKAK<ETHALGS*G
ParentalSCSTEVEKETQEKMTILQTYFRQNRDEVLDNLLAF
SCSTEVE.E..EKM.I...YFRQNRDE.L..LL.F
RetrocopySCSTEVE-EN*EKMIIFHNYFRQNRDEGLGHLLVF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 53 .52 RPM
SRP007412_cerebellum 0 .00 RPM 34 .75 RPM
SRP007412_heart 0 .00 RPM 14 .73 RPM
SRP007412_kidney 0 .00 RPM 99 .85 RPM
SRP007412_liver 0 .00 RPM 31 .73 RPM
SRP007412_testis 0 .00 RPM 86 .20 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_632 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_632 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 16 parental genes, and 61 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000204613 retrocopies
Dasypus novemcinctus ENSDNOG0000000808315 retrocopies
Dipodomys ordii ENSDORG000000148505 retrocopies
Echinops telfairi ENSETEG000000080803 retrocopies
Homo sapiens ENSG000001368883 retrocopies
Gorilla gorilla ENSGGOG00000004011 4 retrocopies
Loxodonta africana ENSLAFG000000134372 retrocopies
Myotis lucifugus ENSMLUG000000086572 retrocopies
Macaca mulatta ENSMMUG000000048994 retrocopies
Monodelphis domestica ENSMODG000000195741 retrocopy
Mus musculus ENSMUSG000000391055 retrocopies
Nomascus leucogenys ENSNLEG000000168332 retrocopies
Pan troglodytes ENSPTRG000000212902 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000158575 retrocopies
Tupaia belangeri ENSTBEG000000109852 retrocopies
Tarsius syrichta ENSTSYG000000114743 retrocopies



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