Parental gene:

ENSCJAG00000020461

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:157960994..157971669(+)


>ENSCJAG00000020461
ATGGCCAGTCAGTCGCAGGGGATTCAGCAGCTGCTGCAGGCCGAGAAGCGGGCTGCCGAGAAGGTGTCTGAGGCCCGCAA
AAGAAAGAACCGGAGGCTGAAGCAGGCCAAAGAAGAAGCTCAGGCTGAAATTGAACAGTACCGCCTGCAGAGGGAGAAAG
AGTTCAAGGCCAAGGAAGCTGCGGCACTGGGATCCCATGGCAGTTGCAGCACCGAAGTGGAGAAGGAGACCCAGGAGAAG
ATGACCATCCTCCAGACCTACTTTCGGCAGAACAGGGATGAAGTCTTGGATAATCTCTTGGCTTTTGTCTGTGACATTCG
GCCAGAAATCCATGAAAACTACCGCATAAATGGTTAA

Library Parental gene expression (RPM)
SRP051959_colon 81 .56 RPM
SRP051959_heart 54 .02 RPM
SRP051959_kidney 181 .13 RPM
SRP051959_liver 88 .51 RPM
SRP051959_lung 78 .56 RPM
SRP051959_lymph_node 83 .01 RPM
SRP051959_skeletal_muscle 70 .86 RPM
SRP051959_spleen 89 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012509 possible_ortholog 3 retrogenes
retro_amel_1053, retro_amel_376, retro_amel_999,
Cavia porcellus ENSCPOG00000000763 possible_ortholog 5 retrogenes
retro_cpor_1523, retro_cpor_204, retro_cpor_688, retro_cpor_742, retro_cpor_852,
Dasypus novemcinctus ENSDNOG00000008083 ortholog_one2many 15 retrogenes
retro_dnov_1173, retro_dnov_1447, retro_dnov_1475, retro_dnov_1504, retro_dnov_1588, retro_dnov_1645, retro_dnov_193, retro_dnov_1998, retro_dnov_2179, retro_dnov_218, retro_dnov_2416, retro_dnov_245, retro_dnov_336, retro_dnov_479, retro_dnov_790,
Dipodomys ordii ENSDORG00000014850 ortholog_one2many 5 retrogenes
retro_dord_434, retro_dord_466, retro_dord_614, retro_dord_640, retro_dord_749,
Equus caballus ENSECAG00000011155 possible_ortholog 1 retrogene
retro_ecab_816,
Echinops telfairi ENSETEG00000008080 ortholog_one2many 3 retrogenes
retro_etel_350, retro_etel_594, retro_etel_996,
Felis catus ENSFCAG00000000160 possible_ortholog 2 retrogenes
retro_fcat_1614, retro_fcat_402,
Homo sapiens ENSG00000136888 ortholog_one2many 3 retrogenes
retro_hsap_3198, retro_hsap_4049, retro_hsap_763,
Gorilla gorilla ENSGGOG00000004011 ortholog_one2many 4 retrogenes
retro_ggor_1331, retro_ggor_2215, retro_ggor_2717, retro_ggor_632,
Loxodonta africana ENSLAFG00000013437 ortholog_one2many 2 retrogenes
retro_lafr_1002, retro_lafr_39,
Microcebus murinus ENSMICG00000015368 possible_ortholog 3 retrogenes
retro_mmur_1217, retro_mmur_1259, retro_mmur_755,
Myotis lucifugus ENSMLUG00000008657 possible_ortholog 2 retrogenes
retro_mluc_373, retro_mluc_839,
Macaca mulatta ENSMMUG00000004899 ortholog_one2many 4 retrogenes
retro_mmul_1783, retro_mmul_2018, retro_mmul_2046, retro_mmul_331,
Monodelphis domestica ENSMODG00000019574 ortholog_one2many 1 retrogene
retro_mdom_1675,
Mustela putorius furo ENSMPUG00000001653 possible_ortholog 3 retrogenes
retro_mputfur_1338, retro_mputfur_922, retro_mputfur_994,
Mus musculus ENSMUSG00000039105 possible_ortholog 5 retrogenes
retro_mmus_2028, retro_mmus_2784, retro_mmus_2787, retro_mmus_3316, retro_mmus_819,
Nomascus leucogenys ENSNLEG00000016833 ortholog_one2many 2 retrogenes
retro_nleu_1151, retro_nleu_3045,
Oryctolagus cuniculus ENSOCUG00000026252 possible_ortholog 3 retrogenes
retro_ocun_1411, retro_ocun_368, retro_ocun_639,
Otolemur garnettii ENSOGAG00000010103 possible_ortholog 3 retrogenes
retro_ogar_1824, retro_ogar_2822, retro_ogar_342,
Pan troglodytes ENSPTRG00000021290 ortholog_one2many 2 retrogenes
retro_ptro_2248, retro_ptro_2744,
Pteropus vampyrus ENSPVAG00000008334 possible_ortholog 1 retrogene
retro_pvam_1432,
Rattus norvegicus ENSRNOG00000008163 possible_ortholog 2 retrogenes
retro_rnor_1246, retro_rnor_676,
Ictidomys tridecemlineatus ENSSTOG00000015857 ortholog_one2many 5 retrogenes
retro_itri_1102, retro_itri_1235, retro_itri_1281, retro_itri_1340, retro_itri_1669,
Tupaia belangeri ENSTBEG00000010985 ortholog_one2many 2 retrogenes
retro_tbel_2147, retro_tbel_786,
Tarsius syrichta ENSTSYG00000011474 ortholog_one2many 3 retrogenes
retro_tsyr_1865, retro_tsyr_2141, retro_tsyr_614,
Tursiops truncatus ENSTTRG00000015203 possible_ortholog 2 retrogenes
retro_ttru_125, retro_ttru_480,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_76 93.22 100.00
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2. retro_cjac_1788 52.54 98.31
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3. retro_cjac_2513 77.19 94.92
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Download FASTA sequences of all ENSCJAG00000020461 retrocopies