RetrogeneDB ID: | retro_mmul_2046 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:147739492..147739836(+) | ||
Located in intron of: | ENSMMUG00000005567 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9909 | ||
Ensembl ID: | ENSMMUG00000004899 | ||
Aliases: | None | ||
Description: | V-type proton ATPase subunit G 1 [Source:RefSeq peptide;Acc:NP_001180531] |
Percent Identity: | 64.1 % |
Parental protein coverage: | 98.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ASQSQGIQQLLQAEKR-AAEKVSEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEAAALGSHGSCS |
ASQSQGIQQLLQA....A.EKVS.....K..RLKQAK..A.AE.EQ.RL.REKEFK.KEAAAL.SH.... | |
Retrocopy | ASQSQGIQQLLQAKTQ<ATEKVSKS-EQKT*RLKQAKGAAEAETEQHRLKREKEFKTKEAAALESHSGRG |
Parental | TEVEKETQEKMTILQTYFRQNRDEVLDNLLAFVCDIRPEIHENYRIN |
T.V..E.Q.K.T.LQ.YF.QN..E.L..LLAFVCD...EIHENY.IN | |
Retrocopy | TQVAQEAQKKRTSLQNYFQQNEGEALASLLAFVCDTWTEIHENYCIN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 23 .98 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 25 .86 RPM |
SRP007412_cerebellum | 0 .00 RPM | 23 .89 RPM |
SRP007412_heart | 0 .00 RPM | 22 .73 RPM |
SRP007412_kidney | 0 .00 RPM | 36 .50 RPM |
SRP007412_liver | 0 .00 RPM | 10 .37 RPM |
SRP007412_testis | 0 .04 RPM | 44 .70 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2215 |
Callithrix jacchus | retro_cjac_1788 |