RetrogeneDB ID: | retro_hsap_3036 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:46725849..46726425(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000249936 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAC1 | ||
Ensembl ID: | ENSG00000136238 | ||
Aliases: | RAC1, Rac-1, TC-25, p21-Rac1 | ||
Description: | ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) [Source:HGNC Symbol;Acc:9801] |
Percent Identity: | 97.92 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL |
MQAIK.VVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL | |
Retrocopy | MQAIKFVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL |
Parental | SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYP |
SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD.IEKLKEKKLTPITYP | |
Retrocopy | SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDPIEKLKEKKLTPITYP |
Parental | QGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRKCLLL |
QGLAMAKEIGAVKYLE.SALTQRG.KTVFDEAIRAVLCPPPVKKRKRKCLLL | |
Retrocopy | QGLAMAKEIGAVKYLERSALTQRGIKTVFDEAIRAVLCPPPVKKRKRKCLLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 2 .64 RPM | 299 .08 RPM |
bodymap2_adrenal | 3 .05 RPM | 316 .19 RPM |
bodymap2_brain | 1 .52 RPM | 421 .92 RPM |
bodymap2_breast | 1 .87 RPM | 323 .35 RPM |
bodymap2_colon | 2 .40 RPM | 312 .24 RPM |
bodymap2_heart | 0 .20 RPM | 153 .30 RPM |
bodymap2_kidney | 0 .52 RPM | 226 .02 RPM |
bodymap2_liver | 0 .23 RPM | 109 .86 RPM |
bodymap2_lung | 1 .09 RPM | 367 .58 RPM |
bodymap2_lymph_node | 0 .73 RPM | 226 .96 RPM |
bodymap2_ovary | 1 .95 RPM | 345 .11 RPM |
bodymap2_prostate | 0 .85 RPM | 336 .25 RPM |
bodymap2_skeletal_muscle | 0 .80 RPM | 296 .79 RPM |
bodymap2_testis | 1 .83 RPM | 223 .28 RPM |
bodymap2_thyroid | 1 .28 RPM | 299 .27 RPM |
bodymap2_white_blood_cells | 0 .89 RPM | 226 .06 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_144093 | 507 libraries | 872 libraries | 435 libraries | 14 libraries | 1 library |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000070831 | 6 retrocopies | |
Homo sapiens | ENSG00000119729 | 3 retrocopies | |
Homo sapiens | ENSG00000136238 | 6 retrocopies |
retro_hsap_1256, retro_hsap_1925, retro_hsap_28, retro_hsap_3036 , retro_hsap_3072, retro_hsap_4910,
|
Gorilla gorilla | ENSGGOG00000026733 | 2 retrocopies | |
Mus musculus | ENSMUSG00000001847 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018910 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000001068 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006784 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007272 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000001618 | 2 retrocopies | |
Xenopus tropicalis | ENSXETG00000027593 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .81 RPM |
CEU_NA11843 | 0 .48 RPM |
CEU_NA11930 | 0 .85 RPM |
CEU_NA12004 | 0 .46 RPM |
CEU_NA12400 | 0 .28 RPM |
CEU_NA12751 | 0 .29 RPM |
CEU_NA12760 | 0 .81 RPM |
CEU_NA12827 | 0 .28 RPM |
CEU_NA12872 | 0 .27 RPM |
CEU_NA12873 | 0 .45 RPM |
FIN_HG00183 | 0 .41 RPM |
FIN_HG00277 | 0 .41 RPM |
FIN_HG00315 | 0 .30 RPM |
FIN_HG00321 | 0 .21 RPM |
FIN_HG00328 | 0 .31 RPM |
FIN_HG00338 | 0 .28 RPM |
FIN_HG00349 | 0 .57 RPM |
FIN_HG00375 | 0 .51 RPM |
FIN_HG00377 | 0 .38 RPM |
FIN_HG00378 | 0 .32 RPM |
GBR_HG00099 | 0 .70 RPM |
GBR_HG00111 | 0 .34 RPM |
GBR_HG00114 | 0 .50 RPM |
GBR_HG00119 | 0 .31 RPM |
GBR_HG00131 | 0 .49 RPM |
GBR_HG00133 | 0 .51 RPM |
GBR_HG00134 | 0 .33 RPM |
GBR_HG00137 | 0 .41 RPM |
GBR_HG00142 | 0 .47 RPM |
GBR_HG00143 | 0 .45 RPM |
TSI_NA20512 | 0 .54 RPM |
TSI_NA20513 | 0 .46 RPM |
TSI_NA20518 | 1 .08 RPM |
TSI_NA20532 | 0 .20 RPM |
TSI_NA20538 | 0 .55 RPM |
TSI_NA20756 | 0 .67 RPM |
TSI_NA20765 | 0 .31 RPM |
TSI_NA20771 | 0 .62 RPM |
TSI_NA20786 | 0 .31 RPM |
TSI_NA20798 | 0 .53 RPM |
YRI_NA18870 | 0 .85 RPM |
YRI_NA18907 | 0 .31 RPM |
YRI_NA18916 | 0 .25 RPM |
YRI_NA19093 | 0 .57 RPM |
YRI_NA19099 | 0 .59 RPM |
YRI_NA19114 | 0 .47 RPM |
YRI_NA19118 | 0 .37 RPM |
YRI_NA19213 | 0 .43 RPM |
YRI_NA19214 | 0 .32 RPM |
YRI_NA19223 | 0 .44 RPM |