RetrogeneDB ID: | retro_hsap_2968 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:110476540..110476885(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000249965 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSG00000070831 | ||
Aliases: | CDC42, CDC42Hs, G25K | ||
Description: | cell division cycle 42 [Source:HGNC Symbol;Acc:1736] |
Percent Identity: | 70.09 % |
Parental protein coverage: | 61.26 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEK |
TD.FLVCFSVVSP.SF...KEK..PEITHHCPK.PFLLV.TQIDLR...S.IEK..KNK.KPITPETAEK | |
Retrocopy | TDIFLVCFSVVSPCSF*SMKEK*GPEITHHCPKAPFLLVTTQIDLRG--SIIEKITKNK*KPITPETAEK |
Parental | LARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL |
.A..LKAVKY......TQ..LKN.FD.AILA.LEPPE.KKS....LL | |
Retrocopy | PAHNLKAVKYMDGPVPTQQDLKNGFDKAILAVLEPPELKKSWKPMLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 397 .02 RPM |
bodymap2_adrenal | 0 .10 RPM | 299 .65 RPM |
bodymap2_brain | 0 .00 RPM | 209 .16 RPM |
bodymap2_breast | 0 .00 RPM | 331 .19 RPM |
bodymap2_colon | 0 .00 RPM | 227 .18 RPM |
bodymap2_heart | 0 .00 RPM | 123 .43 RPM |
bodymap2_kidney | 0 .00 RPM | 207 .82 RPM |
bodymap2_liver | 0 .00 RPM | 90 .92 RPM |
bodymap2_lung | 0 .00 RPM | 331 .80 RPM |
bodymap2_lymph_node | 0 .11 RPM | 187 .27 RPM |
bodymap2_ovary | 0 .08 RPM | 321 .54 RPM |
bodymap2_prostate | 0 .09 RPM | 218 .41 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 105 .94 RPM |
bodymap2_testis | 0 .00 RPM | 229 .71 RPM |
bodymap2_thyroid | 0 .00 RPM | 229 .89 RPM |
bodymap2_white_blood_cells | 0 .10 RPM | 576 .79 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2057 |
Pongo abelii | retro_pabe_2461 |
Macaca mulatta | retro_mmul_1900 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014707 | 5 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005306 | 10 retrocopies | |
Callithrix jacchus | ENSCJAG00000005912 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000006543 | 4 retrocopies | |
Equus caballus | ENSECAG00000019180 | 1 retrocopy | |
Felis catus | ENSFCAG00000004853 | 4 retrocopies | |
Homo sapiens | ENSG00000070831 | 6 retrocopies |
retro_hsap_2775, retro_hsap_2968 , retro_hsap_3028, retro_hsap_3404, retro_hsap_3848, retro_hsap_4013,
|
Homo sapiens | ENSG00000119729 | 3 retrocopies | |
Homo sapiens | ENSG00000136238 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000013365 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000016078 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000015999 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009986 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014261 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005184 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000003520 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .09 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .06 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .05 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .11 RPM |
GBR_HG00142 | 0 .06 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .04 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .06 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .05 RPM |
YRI_NA19114 | 0 .08 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .00 RPM |