RetrogeneDB ID: | retro_hsap_3072 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:108124578..108125081(-) | ||
Located in intron of: | ENSG00000155011 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000213522 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAC1 | ||
Ensembl ID: | ENSG00000136238 | ||
Aliases: | RAC1, Rac-1, TC-25, p21-Rac1 | ||
Description: | ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) [Source:HGNC Symbol;Acc:9801] |
Percent Identity: | 88.17 % |
Parental protein coverage: | 87.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MQAIKCVVVGDGAVGKTC-LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP |
MQAIK.VVVGDGAVG.T..LLISYTTNAFPGEYIPTVFDNYSANV.VDGKPVNLGLWDT..QEDYDRL.P | |
Retrocopy | MQAIKGVVVGDGAVGETS<LLISYTTNAFPGEYIPTVFDNYSANVVVDGKPVNLGLWDTVAQEDYDRLCP |
Parental | LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY |
L.YPQTDVFLICFSLVSPASFE.VRAKWYPEV.HHCPNTPIILVGTKL.LRDD.DT.EKLKEKKLTPITY | |
Retrocopy | LPYPQTDVFLICFSLVSPASFEKVRAKWYPEVEHHCPNTPIILVGTKLELRDDTDTTEKLKEKKLTPITY |
Parental | PQGLAMAKEIGAVKYLECSALTQRGLKTV |
.QGLA..KEIGAVKYL.CSALTQRGL..V | |
Retrocopy | LQGLAITKEIGAVKYLKCSALTQRGLNSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 299 .08 RPM |
bodymap2_adrenal | 0 .00 RPM | 316 .19 RPM |
bodymap2_brain | 0 .00 RPM | 421 .92 RPM |
bodymap2_breast | 0 .00 RPM | 323 .35 RPM |
bodymap2_colon | 0 .00 RPM | 312 .24 RPM |
bodymap2_heart | 0 .00 RPM | 153 .30 RPM |
bodymap2_kidney | 0 .00 RPM | 226 .02 RPM |
bodymap2_liver | 0 .00 RPM | 109 .86 RPM |
bodymap2_lung | 0 .00 RPM | 367 .58 RPM |
bodymap2_lymph_node | 0 .00 RPM | 226 .96 RPM |
bodymap2_ovary | 0 .00 RPM | 345 .11 RPM |
bodymap2_prostate | 0 .00 RPM | 336 .25 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 296 .79 RPM |
bodymap2_testis | 0 .00 RPM | 223 .28 RPM |
bodymap2_thyroid | 0 .00 RPM | 299 .27 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 226 .06 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2110 |
Pongo abelii | retro_pabe_2546 |
Macaca mulatta | retro_mmul_1964 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000070831 | 6 retrocopies | |
Homo sapiens | ENSG00000119729 | 3 retrocopies | |
Homo sapiens | ENSG00000136238 | 6 retrocopies |
retro_hsap_1256, retro_hsap_1925, retro_hsap_28, retro_hsap_3036, retro_hsap_3072 , retro_hsap_4910,
|
Gorilla gorilla | ENSGGOG00000026733 | 2 retrocopies | |
Mus musculus | ENSMUSG00000001847 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018910 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000001068 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006784 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007272 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000001618 | 2 retrocopies | |
Xenopus tropicalis | ENSXETG00000027593 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |