RetrogeneDB ID: | retro_itri_152 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393308.1:14211081..14211603(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000028574 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A2 | ||
Ensembl ID: | ENSSTOG00000002775 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:9635] |
Percent Identity: | 82.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIYVLDWPFDDG |
MNRPAPVE..Y.NMRFLITHNPT.ATLN.F.EELKKYGVTT.VRVC.ATYD.A..EKEGI.VLDWPFDDG | |
Retrocopy | MNRPAPVEVTYRNMRFLITHNPTSATLNRFIEELKKYGVTTIVRVCEATYDTALMEKEGIQVLDWPFDDG |
Parental | APPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALIECGMKYEDAVQFIRQKRRGAFNS |
..P.NQIVDDWL.L...KFREEPGCC.AVHCVAGLGR.PVLVALALIE.GMK.EDAVQFIRQKRRGAFNS | |
Retrocopy | SSPSNQIVDDWLSLVNIKFREEPGCCIAVHCVAGLGRTPVLVALALIESGMKNEDAVQFIRQKRRGAFNS |
Parental | KQLLYLEKYRPKMRLRFRDTNGH---CCIQ |
KQLLYLEKYR.KMRLRF.D.NGH...CC.Q | |
Retrocopy | KQLLYLEKYRSKMRLRFKDSNGHRNNCCVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000039121 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006539 | 2 retrocopies | |
Homo sapiens | ENSG00000184007 | 4 retrocopies | |
Mus musculus | ENSMUSG00000028788 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000002137 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002060 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000029603 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001606 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000050044 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000003605 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002775 | 2 retrocopies |
retro_itri_1165, retro_itri_152 ,
|
Tupaia belangeri | ENSTBEG00000006790 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016571 | 2 retrocopies |