Parental gene:

PTP4A2, ENSCJAG00000006539

Aliases:None
Description:protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:9635]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:66112171..66149523(-)


>ENSCJAG00000006539
ATGAACCGTCCAGCCCCTGTGGAGATCTCCTATGAGAACATGCGTTTTCTGATAACTCACAACCCTACCAATGCTACTCT
CAACAAGTTCACAGAGGAACTTAAGAAGTATGGAGTGACGACTTTGGTTCGAGTTTGTGATGCTACATATGATAAAGCTC
CAGTTGAAAAAGAAGGAATCCACGTTCTAGATTGGCCATTTGATGATGGAGCTCCACCCCCTAATCAGATAGTAGATGAT
TGGTTAAACCTGTTAAAAACCAAATTCCGTGAAGAGCCAGGTTGCTGTGTTGCAGTGCATTGTGTTGCGGGATTGGGAAG
GGCACCTGTGCTGGTTGCACTTGCTTTGATTGAATGTGGAATGAAGTACGAAGATGCAGTTCAGTTTATAAGACAAAAAA
GAAGGGGAGCATTCAATTCTAAACAGCTGCTTTACTTGGAGAAATACCGACCTAAGATGCGATTACGCTTCAGAGATACC
AATGGGCATTGCTGTGTTCAGTAG

Library Parental gene expression (RPM)
SRP051959_spleen 89 .31 RPM
SRP051959_skeletal_muscle 69 .73 RPM
SRP051959_lymph_node 60 .25 RPM
SRP051959_lung 62 .14 RPM
SRP051959_liver 46 .85 RPM
SRP051959_kidney 55 .69 RPM
SRP051959_heart 57 .99 RPM
SRP051959_colon 117 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000039121 ortholog_one2one 1 retrogene
retro_btau_638,
Callithrix jacchus ENSCJAG00000001743 within_species_paralog 3 retrogenes
retro_cjac_2812, retro_cjac_4144, retro_cjac_910,
Homo sapiens ENSG00000184007 ortholog_one2one 4 retrogenes
retro_hsap_1069, retro_hsap_1754, retro_hsap_4331, retro_hsap_944,
Mus musculus ENSMUSG00000028788 ortholog_one2one 2 retrogenes
retro_mmus_1894, retro_mmus_2432,
Nomascus leucogenys ENSNLEG00000002137 ortholog_one2one 3 retrogenes
retro_nleu_2880, retro_nleu_2956, retro_nleu_3015,
Oryctolagus cuniculus ENSOCUG00000002060 ortholog_one2one 1 retrogene
retro_ocun_1673,
Otolemur garnettii ENSOGAG00000029603 ortholog_one2one 1 retrogene
retro_ogar_3341,
Pongo abelii ENSPPYG00000001606 ortholog_one2one 3 retrogenes
retro_pabe_1507, retro_pabe_808, retro_pabe_890,
Rattus norvegicus ENSRNOG00000050044 ortholog_one2one 1 retrogene
retro_rnor_305,
Sus scrofa ENSSSCG00000003605 ortholog_one2one 1 retrogene
retro_sscr_1186,
Ictidomys tridecemlineatus ENSSTOG00000002775 ortholog_one2one 2 retrogenes
retro_itri_1165, retro_itri_152,
Tupaia belangeri ENSTBEG00000006790 ortholog_one2one 1 retrogene
retro_tbel_4601,
Tursiops truncatus ENSTTRG00000016571 ortholog_one2one 2 retrogenes
retro_ttru_1396, retro_ttru_1402,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_566 91.07 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cjac_3257 67.44 75.45
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000006539 retrocopies