RetrogeneDB ID: | retro_hsap_1069 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 12:133610063..133610556(+) | ||
Located in intron of: | ENSG00000246394 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000255807 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A2 | ||
Ensembl ID: | ENSG00000184007 | ||
Aliases: | PTP4A2, HH13, HH7-2, HU-PP-1, OV-1, PRL-2, PRL2, PTP4A, PTPCAAX2, ptp-IV1a, ptp-IV1b | ||
Description: | protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:9635] |
Percent Identity: | 71.01 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MNRPAPVEISYENMRFLITHNPTNATL-NKFTEELKKYGVTTLVRVCDATYDKAPVEKEGIHVLDWPFDD |
M...APVEI.Y.NM.FLITH..T.AT..NKFTEE....GVT.LV.VCDAT..K.PVEKEGIH.LDW.FDD | |
Retrocopy | MDCSAPVEI-YRNMHFLITHKSTSATA<NKFTEECETCGVTPLV*VCDATFGKVPVEKEGIHILDWSFDD |
Parental | GAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVA-GLGRAPVLVALALIECGMKYEDAVQFIRQKRRGAF |
.APPPNQI.DDWLNLL.TK.RE.PGCC.AVHC...G.G........A..E.G.KYEDAVQFIRQKRRGAF | |
Retrocopy | EAPPPNQIADDWLNLLITKGREKPGCCLAVHCAV<GIGKG-TCAGSACFEYGIKYEDAVQFIRQKRRGAF |
Parental | NSKQLLYLEKYRPKMRLRFRDTNGHCCVQ |
NSKQLLYLEK.RPK..L.FRDT.GHCCVQ | |
Retrocopy | NSKQLLYLEKCRPKVQLHFRDTSGHCCVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 574 .21 RPM |
bodymap2_adrenal | 0 .00 RPM | 318 .20 RPM |
bodymap2_brain | 0 .00 RPM | 334 .61 RPM |
bodymap2_breast | 0 .00 RPM | 434 .95 RPM |
bodymap2_colon | 0 .00 RPM | 272 .98 RPM |
bodymap2_heart | 0 .00 RPM | 189 .34 RPM |
bodymap2_kidney | 0 .00 RPM | 186 .85 RPM |
bodymap2_liver | 0 .00 RPM | 104 .10 RPM |
bodymap2_lung | 0 .00 RPM | 295 .96 RPM |
bodymap2_lymph_node | 0 .00 RPM | 311 .00 RPM |
bodymap2_ovary | 0 .00 RPM | 426 .92 RPM |
bodymap2_prostate | 0 .00 RPM | 332 .86 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 538 .11 RPM |
bodymap2_testis | 0 .00 RPM | 264 .30 RPM |
bodymap2_thyroid | 0 .00 RPM | 390 .94 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 654 .97 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_727 |
Gorilla gorilla | retro_ggor_843 |
Pongo abelii | retro_pabe_890 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000039121 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006539 | 2 retrocopies | |
Homo sapiens | ENSG00000112245 | 5 retrocopies | |
Homo sapiens | ENSG00000184007 | 4 retrocopies | |
Mus musculus | ENSMUSG00000028788 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000002137 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002060 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000029603 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001606 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000050044 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000003605 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002775 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000006790 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016571 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |