Parental gene:

PTP4A2, ENSPPYG00000001606

Aliases:None
Description:protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:9635]
Organism:Orangutan (Pongo abelii)
Coordinates:1:198328063..198342415(+)


>ENSPPYG00000001606
ATGAACCGTCCAGCCCCTGTGGAGATCTCCTATGAGAACATGCGTTTTCTGATAACTCACAACCCTACCAATGCTACTCT
CAACAAGTTCACAGAGGAACTTAAGAAGTATGGAGTGACGACTTTGGTTCGAGTTTGTGATGCTACATATGATAAAGCTC
CAGTTGAAAAAGAAGGAATCCACGTTCTAGATTGGCCATTTGATGATGGAGCTCCACCCCCTAATCAGATAGTAGATGAT
TGGTTAAACCTGTTAAAAACCAAATTTCGTGAAGAGCCAGGTTGCTGTGTTGCAGTGCATTGTGTTGCAGGATTGGGAAG
GGCACCTGTGCTGGTTGCACTTGCTTTGATTGAATGTGGAATGAAGTACGAAGATGCAGTTCAGTTTATAAGACAAAAAA
GAAGGGGAGCGTTCAATTCCAAACAGCTGCTTTACTTGGAGAAATACCGACCTAAGATGCGATTACGCTTCAGAGATACC
AATGGGCATTGCTGTGTTCAGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 39 .26 RPM
SRP007412_cerebellum 46 .94 RPM
SRP007412_heart 58 .73 RPM
SRP007412_kidney 53 .23 RPM
SRP007412_liver 45 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000039121 ortholog_one2one 1 retrogene
retro_btau_638,
Callithrix jacchus ENSCJAG00000006539 ortholog_one2one 2 retrogenes
retro_cjac_3257, retro_cjac_566,
Homo sapiens ENSG00000184007 ortholog_one2one 4 retrogenes
retro_hsap_1069, retro_hsap_1754, retro_hsap_4331, retro_hsap_944,
Mus musculus ENSMUSG00000028788 ortholog_one2one 2 retrogenes
retro_mmus_1894, retro_mmus_2432,
Nomascus leucogenys ENSNLEG00000002137 ortholog_one2one 3 retrogenes
retro_nleu_2880, retro_nleu_2956, retro_nleu_3015,
Oryctolagus cuniculus ENSOCUG00000002060 ortholog_one2one 1 retrogene
retro_ocun_1673,
Otolemur garnettii ENSOGAG00000029603 ortholog_one2one 1 retrogene
retro_ogar_3341,
Pongo abelii ENSPPYG00000016743 within_species_paralog 5 retrogenes
retro_pabe_2058, retro_pabe_255, retro_pabe_2660, retro_pabe_3732, retro_pabe_721,
Rattus norvegicus ENSRNOG00000050044 ortholog_one2one 1 retrogene
retro_rnor_305,
Sus scrofa ENSSSCG00000003605 ortholog_one2one 1 retrogene
retro_sscr_1186,
Ictidomys tridecemlineatus ENSSTOG00000002775 ortholog_one2one 2 retrogenes
retro_itri_1165, retro_itri_152,
Tupaia belangeri ENSTBEG00000006790 ortholog_one2one 1 retrogene
retro_tbel_4601,
Tursiops truncatus ENSTTRG00000016571 ortholog_one2one 2 retrogenes
retro_ttru_1396, retro_ttru_1402,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_808 94.05 100.00
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2. retro_pabe_890 70.41 100.00
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3. retro_pabe_1507 90.48 87.43
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Download FASTA sequences of all ENSPPYG00000001606 retrocopies