RetrogeneDB ID: | retro_ocun_1673 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018757:1493897..1494240(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A2 | ||
Ensembl ID: | ENSOCUG00000002060 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:9635] |
Percent Identity: | 63.25 % |
Parental protein coverage: | 69.46 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MNRPAP-VEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDAPYDKAPVEKEGIHVLDWPFDD |
MN.PAP.VEIS.EN..FL..HNP.NAT.NK..EELKK.G.T.LV..CDA.YD...VEKE.I..L...FDD | |
Retrocopy | MNYPAP>VEISHENTHFLLVHNPANATFNKVREELKKHGMTSLV--CDATYDQVTVEKERILILG*SFDD |
Parental | GAPPPNQIVDDWLNLLKNKFREEPGCCVAVHCVAGLGRAPVLVALAL |
GAPPP...V.....LLK..F.EEPG.CVAVH.VAGLG.APVL..L.L | |
Retrocopy | GAPPPIHLVRGLTSLLKTTFPEEPGRCVAVHPVAGLGKAPVLITLTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 31 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 36 .89 RPM |
SRP017611_liver | 0 .00 RPM | 14 .18 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000039121 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006539 | 2 retrocopies | |
Homo sapiens | ENSG00000184007 | 4 retrocopies | |
Mus musculus | ENSMUSG00000028788 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000002137 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002060 | 1 retrocopy |
retro_ocun_1673 ,
|
Oryctolagus cuniculus | ENSOCUG00000006311 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000029603 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001606 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000050044 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000003605 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002775 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000006790 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016571 | 2 retrocopies |