Parental gene:

PTP4A2, ENSBTAG00000039121

Aliases:PTP4A2, PTP4A3
Description:protein tyrosine phosphatase type IVA 3 [Source:RefSeq peptide;Acc:NP_001098468]
Organism:Cow (Bos taurus)
Coordinates:2:122350143..122359897(+)


>ENSBTAG00000039121
ATGAACCGTCCAGCCCCTGTGGAGATCTCTTATGAGAACATGCGTTTTTTGATAACCCACAACCCTACCAATGCTACCCT
CAACAAGTTCACAGAGGAACTTAAGAAGTATGGAGTGACAACTTTGGTTCGAGTTTGTGATGCTACATATGATAAAGCAC
CAGTTGAAAAAGAAGGAATCCACGTTCTAGATTGGCCTTTTGACGATGGAGCGCCACCCCCTAATCAGATAGTAGATGAT
TGGCTAAACCTACTAAAAACCAAATTTCGTGAAGAACCAGGTTGCTGTGTTGCAGTGCATTGTGTTGCAGGATTGGGAAG
GGCACCTGTGCTAGTTGCACTTGCTTTGATTGAATGTGGAATGAAGTACGAGGATGCAGTTCAGTTTATAAGACAAAAAA
GAAGGGGAGCATTCAATTCCAAACAGCTGCTTTACCTGGAGAAATACCGACCTAAGATGCGATTACGCTTCAGAGATACC
AACGGGCATTGCTGTGTTCAGTAA

Library Parental gene expression (RPM)
SRP017611_brain 77 .88 RPM
SRP017611_kidney 89 .09 RPM
SRP017611_liver 83 .44 RPM
ERP005899_muscle 128 .12 RPM
ERP005899_liver 95 .53 RPM
SRP030211_testis 63 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000002275 within_species_paralog 3 retrogenes
retro_btau_1051, retro_btau_1186, retro_btau_859,
Bos taurus ENSBTAG00000046467 within_species_paralog 1 retrogene
retro_btau_380,
Callithrix jacchus ENSCJAG00000006539 ortholog_one2one 2 retrogenes
retro_cjac_3257, retro_cjac_566,
Homo sapiens ENSG00000184007 ortholog_one2one 4 retrogenes
retro_hsap_1069, retro_hsap_1754, retro_hsap_4331, retro_hsap_944,
Mus musculus ENSMUSG00000028788 ortholog_one2one 2 retrogenes
retro_mmus_1894, retro_mmus_2432,
Nomascus leucogenys ENSNLEG00000002137 ortholog_one2one 3 retrogenes
retro_nleu_2880, retro_nleu_2956, retro_nleu_3015,
Oryctolagus cuniculus ENSOCUG00000002060 ortholog_one2one 1 retrogene
retro_ocun_1673,
Otolemur garnettii ENSOGAG00000029603 ortholog_one2one 1 retrogene
retro_ogar_3341,
Pongo abelii ENSPPYG00000001606 ortholog_one2one 3 retrogenes
retro_pabe_1507, retro_pabe_808, retro_pabe_890,
Rattus norvegicus ENSRNOG00000050044 ortholog_one2one 1 retrogene
retro_rnor_305,
Sus scrofa ENSSSCG00000003605 ortholog_one2one 1 retrogene
retro_sscr_1186,
Ictidomys tridecemlineatus ENSSTOG00000002775 ortholog_one2one 2 retrogenes
retro_itri_1165, retro_itri_152,
Tupaia belangeri ENSTBEG00000006790 ortholog_one2one 1 retrogene
retro_tbel_4601,
Tursiops truncatus ENSTTRG00000016571 ortholog_one2one 2 retrogenes
retro_ttru_1396, retro_ttru_1402,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_638 69.47 52.10
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Download FASTA sequences of all ENSBTAG00000039121 retrocopies